Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
TTBK2
Entrez Gene ID
146057
Gene Name
tau tubulin kinase 2
Gene Aliases
SCA11, TTBK
Chromosome Location
Chr.15: 42738974 - 42920995 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq XM_005254171.4 XP_005254228.1 14 - 14 6934 92
XM_005254173.4 XP_005254230.1 14 - 14 6682 92
XM_006720402.3 XP_006720465.1 14 - 14 6409 92
XM_006720403.3 XP_006720466.1 15 - 15 6576 92
XM_017021950.1 XP_016877439.1 13 - 13 6425 92
GenBank mRNA BX648356.1 - 1 - 1 1147 92


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DB137885.1 - 1 388 Chr. 15 - 42743017 - 42743551 [-] on Build GRCh38 92
GenBankmRNA DA808409.1 - 1 117 Chr. 15 - 42742743 - 42743285 [-] on Build GRCh38 92
GenBankmRNA CN291889.1 - 1 426 Chr. 15 - 42742993 - 42743594 [-] on Build GRCh38 92
GenBankmRNA DA498345.1 - 1 316 Chr. 15 - 42742905 - 42743483 [-] on Build GRCh38 92
GenBankmRNA DA083763.1 - 1 383 Chr. 15 - 42743105 - 42743550 [-] on Build GRCh38 92
GenBankmRNA CN356888.1 - 102 Chr. - - [-] on Build 92
GenBankmRNA DA057440.1 - 1 76 Chr. 15 - 42742741 - 42743244 [-] on Build GRCh38 92


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream codanin 1 CDAN1 CDA1, CDAI, CDAN1A, DLT, PRO1295 -3.3kb Sense Chr. - 42723557 - 42737219 on Build GRCh38
Downstream ubiquitin protein ligase E3 component n-recognin 1 UBR1 JBS 198.6kb Sense Chr. - 42942897 - 43106088 on Build GRCh38

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