Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CIITA
Entrez Gene ID
4261
Gene Name
class II, major histocompatibility complex, transactivator
Gene Aliases
C2TA, CIITAIV, MHC2TA, NLRA
Chromosome Location
Chr.16: 10866208 - 10941562 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq XM_006720880.3 XP_006720943.2 20 - 20 4069 92
XM_011522487.2 XP_011520789.1 19 - 19 3806 92
XM_011522488.2 XP_011520790.1 20 - 20 5300 92
XM_011522489.2 XP_011520791.1 19 - 19 3803 92
XM_011522490.2 XP_011520792.1 20 - 20 5298 92
XM_011522492.2 XP_011520794.1 20 - 20 4017 92
XM_011522493.2 XP_011520795.1 20 - 20 4014 92
XM_011522494.2 XP_011520796.1 20 - 20 3781 92
XM_011522495.2 XP_011520797.1 19 - 19 3872 92
XM_011522496.2 XP_011520798.1 19 - 19 3869 92
GenBank mRNA AK124033.1 - 1 - 1 1553 92


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CB956280.1 - 1 293 Chr. 16 - 10935165 - 10935624 [+] on Build GRCh38 92


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream trans-golgi network vesicle protein 23 homolog A TVP23A FAM18A, YDR084C -115.0kb Anti-sense Chr. - 10758034 - 10818902 on Build GRCh38
Downstream C-type lectin domain family 16 member A CLEC16A Gop-1, KIAA0350 8.2kb Sense Chr. - 10944488 - 11193272 on Build GRCh38

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