Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
KCNIP4
Entrez Gene ID
80333
Gene Name
potassium voltage-gated channel interacting protein 4
Gene Aliases
CALP, KCHIP4
Chromosome Location
Chr.4: 20728520 - 21948801 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq XM_011513882.2 XP_011512184.1 8 - 8 88
XM_011513883.2 XP_011512185.1 7 - 7 88
XM_011513884.2 XP_011512186.1 7 - 7 88
XM_011513885.2 XP_011512187.1 7 - 7 88
XM_011513886.2 XP_011512188.1 7 - 7 88
XM_011513887.2 XP_011512189.1 7 - 7 88
XM_011513889.2 XP_011512191.1 7 - 7 88

Gene Symbol
PACRGL
Entrez Gene ID
133015
Gene Name
PARK2 coregulated like
Gene Aliases
C4orf28
Chromosome Location
Chr.4: 20696282 - 20757766 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq XM_011513786.2 XP_011512088.1 11 - 11 5877 88
XM_011513805.2 XP_011512107.1 8 - 8 5418 88
XM_017007747.1 XP_016863236.1 10 - 10 5632 88
XM_017007748.1 XP_016863237.1 10 - 10 5583 88
XM_017007749.1 XP_016863238.1 9 - 9 5498 88
XM_017007751.1 XP_016863240.1 9 - 9 5700 88
XM_017007752.1 XP_016863241.1 8 - 8 5547 88
XM_017007753.1 XP_016863242.1 8 - 8 5417 88
XM_017007754.1 XP_016863243.1 6 - 6 5474 88
XM_017007755.1 XP_016863244.1 6 - 6 5291 88
XM_017007756.1 XP_016863245.1 6 - 6 5284 88
XM_017007757.1 XP_016863246.1 6 - 6 5220 88
XM_017007758.1 XP_016863247.1 5 - 5 5169 88
XM_017007759.1 XP_016863248.1 5 - 5 5117 88


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BQ718422.1 - 1 742 Chr. 4 - 20731176 - 20732094 [+] on Build GRCh38 88
GenBankmRNA AK125392.1 - 2 2050 Chr. 4 - 20729805 - 20732554 [+] on Build GRCh38 88


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream slit guidance ligand 2 SLIT2 SLIL3, Slit-2 -111.1kb Sense Chr. - 20251905 - 20620561 on Build GRCh38
Downstream microRNA 7978 MIR7978 hsa-mir-7978 732.1kb Anti-sense Chr. - 21464700 - 21464758 on Build GRCh38

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