Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CNTN1
Entrez Gene ID
1272
Gene Name
contactin 1
Gene Aliases
F3, GP135, MYPCN
Chromosome Location
Chr.12: 40692439 - 41072412 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001843.3 NP_001834.2 24 - 24 5137 80
NM_175038.2 NP_778203.1 22 - 22 4953 80
XM_005268651.2 XP_005268708.1 24 - 24 5500 80
XM_006719241.2 XP_006719304.1 24 - 24 5124 80
XM_011537926.2 XP_011536228.1 24 - 24 5089 80
XM_011537927.2 XP_011536229.1 24 - 24 5146 80
GenBank mRNA BM717031.1 - 1 - 1 165 80
BX648591.1 - 1 - 1 1852 80


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA HY156829.1 - 1 129 Chr. 12 - 41071762 - 41072253 [+] on Build GRCh38 80
GenBankmRNA BM673895.1 - 1 Chr. 12 - 41071753 - 41072418 [-] on Build GRCh38 80
GenBankmRNA AA492151.1 - 1 Chr. 12 - 41071687 - 41071972 [-] on Build GRCh38 80
GenBankmRNA DV459492.1 - 1 Chr. 12 - 41071824 - 41072081 [-] on Build GRCh38 80
GenBankmRNA BU858543.1 - 95 Chr. - - [-] on Build 80
GenBankmRNA AW020926.1 - 1 270 Chr. 12 - 41071626 - 41071952 [+] on Build GRCh38 80


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream mucin 19, oligomeric MUC19 MUC-19 -499.3kb Sense Chr. - 40393394 - 40570757 on Build GRCh38
Downstream PDZ domain containing ring finger 4 PDZRN4 LNX4, SAMCAP3L 115.9kb Sense Chr. - 41188448 - 41574590 on Build GRCh38

View Full Product Details