Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Xist
Entrez Gene ID
213742
Gene Name
inactive X specific transcripts
Gene Aliases
A430022B11, AI314753
Chromosome Location
Chr.X: 103460373 - 103483233 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_001463.3 5 - 6 10101 81
NR_001570.2 5 - 6 10101 81
GenBank mRNA L04961.1 - 5 - 6 10065 81


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CA880243.1 - 1 - 2 55 Chr. X - 103467794 - 103469352 [-] on Build GRCm38 81


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream testis specific X-linked gene Tsx AV207184 -44.2kb Anti-sense Chr. - 103409101 - 103424588 on Build GRCm38
Downstream Jpx transcript, Xist activator (non-protein coding) Jpx 2010000I03Rik, 2510040I06Rik, Enox 24.1kb Anti-sense Chr. - 103493576 - 103506425 on Build GRCm38

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