Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Non Gene Transcripts

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CF949002.1	-	1	125		Chr. 2 - 101701308 - 101702072 [+] on Build GRCm38	92
GenBankmRNA	BX511797.1	-	1	307		Chr. 2 - 101701126 - 101701537 [+] on Build GRCm38	92
GenBankmRNA	BI556988.1	-	1	391		Chr. 2 - 101701048 - 101701674 [+] on Build GRCm38	92
GenBankmRNA	BG086626.2	-	1	424		Chr. 2 - 101701009 - 101701553 [+] on Build GRCm38	92
GenBankmRNA	BM244123.2	-	1			Chr. 2 - 101701217 - 101701520 [-] on Build GRCm38	92
GenBankmRNA	BM246723.2	-	1			Chr. 2 - 101700942 - 101701520 [-] on Build GRCm38	92
GenBankmRNA	BM246628.2	-	1			Chr. 2 - 101700994 - 101701520 [-] on Build GRCm38	92
GenBankmRNA	CX211372.1	-	1	140		Chr. 2 - 101701293 - 101701702 [+] on Build GRCm38	92
GenBankmRNA	AI851288.1	-	1			Chr. 2 - 101701232 - 101701669 [-] on Build GRCm38	92
GenBankmRNA	BB772112.1	-	1	316		Chr. 2 - 101701116 - 101701668 [+] on Build GRCm38	92
GenBankmRNA	AV377471.2	-	1	450		Chr. 2 - 101701017 - 101701668 [+] on Build GRCm38	92
GenBankmRNA	AA118698.1	-	1	307		Chr. 2 - 101701126 - 101701537 [+] on Build GRCm38	92
GenBankmRNA	AI414846.1	-	1			Chr. 2 - 101701262 - 101701669 [-] on Build GRCm38	92
GenBankmRNA	BE628535.1	-	1			Chr. 2 - 101701204 - 101701668 [-] on Build GRCm38	92
GenBankmRNA	BB811738.1	-	1	182		Chr. 2 - 101701250 - 101701684 [+] on Build GRCm38	92

Adjacent Gene Details

	Gene Name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromosome
Upstream	recombination activating gene 1	Rag1	Rag-1	-49.2kb	Anti-sense	Chr. - 101638252 - 101649532 on Build GRCm38
Downstream	proline rich 5 like	Prr5l	2600010E01Rik, 4833411O04Rik, Protor-2, Protor2	12.6kb	Anti-sense	Chr. - 101714280 - 101883074 on Build GRCm38

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