Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Xist
Entrez Gene ID
213742
Gene Name
inactive X specific transcripts
Gene Aliases
A430022B11, AI314753
Chromosome Location
Chr.X: 103460373 - 103483233 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_001463.3 7 - 7 14131 102
GenBank mRNA AK011511.1 - 1 - 1 245 102


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CB183925.1 - 1 335 Chr. X - 103463512 - 103464459 [-] on Build GRCm38 102
GenBankmRNA BY710775.1 - 1 242 Chr. X - 103463726 - 103464401 [-] on Build GRCm38 102
GenBankmRNA BI685302.1 - 1 563 Chr. X - 103463885 - 103464722 [-] on Build GRCm38 102
GenBankmRNA BE531574.1 - 1 325 Chr. X - 103463850 - 103464484 [-] on Build GRCm38 102
GenBankmRNA AJ421479.1 - 125353 Chr. - - [-] on Build 102
GenBankmRNA CB056144.1 - 1 289 Chr. X - 103463755 - 103464448 [-] on Build GRCm38 102
GenBankmRNA BG298196.1 - 330 Chr. - - [-] on Build 101


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream testis specific X-linked gene Tsx AV207184 -38.9kb Anti-sense Chr. - 103409101 - 103424588 on Build GRCm38
Downstream Jpx transcript, Xist activator (non-protein coding) Jpx 2010000I03Rik, 2510040I06Rik, Enox 29.2kb Anti-sense Chr. - 103493576 - 103506425 on Build GRCm38

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