Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol: Snord89
Entrez Gene ID: 100217461
Gene Name: small nucleolar RNA, C/D box 89
Gene Aliases: MBII-289
Chromosome Location: Chr.1: 39548747 - 39548840 on Build GRCm38

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Amplicon Length
RefSeq	NR_028555.2		1 - 1	49	65
GenBank mRNA	AF357353.1	-	1 - 1	48	65

Non Gene Transcripts

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AI049474.1	-	1	129		Chr. 1 - 39548491 - 39548913 [-] on Build GRCm38	65
GenBankmRNA	BQ885349.1	-		58		Chr. - - [-] on Build	65

Adjacent Gene Details

	Gene Name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromosome
Upstream	CCR4-NOT transcription complex, subunit 11	Cnot11	2410015L18Rik, C40, D1Bwg0212e	-1.9kb	Anti-sense	Chr. - 39535802 - 39546881 on Build GRCm38
Downstream	ring finger protein 149	Rnf149	1600023E10Rik, AV037261, C76763, Gm15832, Greul4, OTTMUSG00000026591	2.5kb	Sense	Chr. - 39551294 - 39577441 on Build GRCm38

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