Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Hnrnpa1
Entrez Gene ID
15382
Gene Name
heterogeneous nuclear ribonucleoprotein A1
Gene Aliases
HDP-1, Hdp, Hnrpa1, hnRNP A1, hnrnp-A1
Chromosome Location
Chr.15: 103240397 - 103246698 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_104427.1 10 - 11 1166 99
GenBank mRNA AK136113.1 - 10 - 11 1136 99
BC052723.1 - 12 - 13 2964 99
CJ235774.1 - 1 - 2 307 99


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AW541254.1 - 1 - 2 Chr. 15 - 103242437 - 103246690 [-] on Build GRCm38 99
GenBankmRNA CF968323.1 - 1 - 2 174 Chr. 15 - 103246266 - 103246692 [+] on Build GRCm38 99
GenBankmRNA BM237110.2 - 1 - 2 Chr. 15 - 103243064 - 103246690 [-] on Build GRCm38 99
GenBankmRNA BF458568.1 - 1 - 2 Chr. 15 - 103246351 - 103246692 [-] on Build GRCm38 99
GenBankmRNA CF804621.1 - 1 - 2 175 Chr. 15 - 103246270 - 103246692 [+] on Build GRCm38 99
GenBankmRNA BY754924.1 - 6 - 7 548 Chr. 15 - 103242217 - 103246683 [+] on Build GRCm38 99
GenBankmRNA BY470915.1 - 4 - 5 365 Chr. 15 - 103242650 - 103246686 [+] on Build GRCm38 99
GenBankmRNA CX567652.1 - 5 - 6 458 Chr. 15 - 103242395 - 103246692 [+] on Build GRCm38 99
GenBankmRNA BM222134.2 - 1 - 2 Chr. 15 - 103242417 - 103246690 [-] on Build GRCm38 99
GenBankmRNA BP772550.1 - 1 - 2 Chr. 15 - 103242639 - 103246693 [-] on Build GRCm38 99
GenBankmRNA BY562160.1 - 3 - 4 266 Chr. 15 - 103243660 - 103246693 [+] on Build GRCm38 100
GenBankmRNA BF458021.1 - 1 - 2 Chr. 15 - 103246271 - 103246658 [-] on Build GRCm38 99
GenBankmRNA BE992375.1 - 1 - 2 Chr. 15 - 103243703 - 103246692 [-] on Build GRCm38 99
GenBankmRNA BY467940.1 - 5 - 6 406 Chr. 15 - 103242437 - 103246686 [+] on Build GRCm38 99
GenBankmRNA BP771005.1 - 1 - 2 Chr. 15 - 103242650 - 103246692 [-] on Build GRCm38 99
GenBankmRNA BF466706.1 - 3 - 4 315 Chr. 15 - 103242921 - 103246626 [+] on Build GRCm38 99
GenBankmRNA BB686770.1 - 1 - 2 212 Chr. 15 - 103246208 - 103246688 [+] on Build GRCm38 99
GenBankmRNA AA185400.1 - 3 - 4 235 Chr. 15 - 103243701 - 103246692 [+] on Build GRCm38 99
GenBankmRNA BE945221.1 - 1 - 2 Chr. 15 - 103243703 - 103246692 [-] on Build GRCm38 99
GenBankmRNA AA815843.1 - 3 - 4 251 Chr. 15 - 103243672 - 103246691 [+] on Build GRCm38 99
GenBankmRNA BI788547.1 - 1 - 2 Chr. 15 - 103242451 - 103246671 [-] on Build GRCm38 99
GenBankmRNA EH111095.1 - 1 - 2 76 Chr. 15 - 103246342 - 103246588 [+] on Build GRCm38 99
GenBankmRNA BM125793.1 - 1 - 2 253 Chr. 15 - 103246165 - 103246692 [+] on Build GRCm38 99
GenBankmRNA BE852830.1 - 1 - 2 Chr. 15 - 103245464 - 103246693 [-] on Build GRCm38 99
GenBankmRNA CJ224239.1 - 1 - 2 319 Chr. 15 - 103246100 - 103246690 [+] on Build GRCm38 99
GenBankmRNA BM125542.1 - 1 - 2 Chr. 15 - 103246195 - 103246692 [-] on Build GRCm38 99
GenBankmRNA AW550749.2 - 1 - 2 Chr. 15 - 103242697 - 103246690 [-] on Build GRCm38 99
GenBankmRNA AV449278.1 - 3 - 4 159 Chr. 15 - 103242702 - 103246683 [+] on Build GRCm38 99
GenBankmRNA BB698540.1 - 4 - 5 344 Chr. 15 - 103242672 - 103246689 [+] on Build GRCm38 99
GenBankmRNA BE685966.1 - 1 - 2 Chr. 15 - 103246118 - 103246690 [-] on Build GRCm38 99
GenBankmRNA AA793193.1 - 1 - 2 154 Chr. 15 - 103246273 - 103246687 [+] on Build GRCm38 99
GenBankmRNA BQ266428.1 - 1 - 2 Chr. 15 - 103242385 - 103246692 [-] on Build GRCm38 99
GenBankmRNA AV449224.1 - 3 - 4 160 Chr. 15 - 103242701 - 103246692 [+] on Build GRCm38 99
GenBankmRNA CF616707.1 - 1 - 2 142 Chr. 15 - 103246276 - 103246692 [+] on Build GRCm38 99
GenBankmRNA AW046975.1 - 1 - 2 Chr. 15 - 103243698 - 103246693 [-] on Build GRCm38 99
GenBankmRNA AA688742.1 - 1 - 2 149 Chr. 15 - 103246278 - 103246687 [+] on Build GRCm38 99
GenBankmRNA BF458098.1 - 1 - 2 Chr. 15 - 103243703 - 103246658 [-] on Build GRCm38 99
GenBankmRNA CB945623.1 - 136 Chr. - - [-] on Build 99
GenBankmRNA AV516627.1 - 1 - 2 107 Chr. 15 - 103246311 - 103246692 [+] on Build GRCm38 99
GenBankmRNA BM055858.1 - 1 - 2 253 Chr. 15 - 103246165 - 103246690 [+] on Build GRCm38 99
GenBankmRNA CJ312002.1 - 1 - 2 276 Chr. 15 - 103246143 - 103246690 [+] on Build GRCm38 99
GenBankmRNA BM241356.2 - 1 - 2 Chr. 15 - 103243722 - 103246693 [-] on Build GRCm38 99
GenBankmRNA AU019235.1 - 1 - 2 Chr. 15 - 103243631 - 103246690 [-] on Build GRCm38 99
GenBankmRNA BF140165.1 - 326 Chr. - - [-] on Build 99
GenBankmRNA AA672806.1 - 1 - 2 Chr. 15 - 103242643 - 103246668 [-] on Build GRCm38 99
GenBankmRNA CJ235670.1 - 1 - 2 323 Chr. 15 - 103246096 - 103246698 [+] on Build GRCm38 99
GenBankmRNA CJ208873.1 - 3 - 4 264 Chr. 15 - 103243659 - 103246690 [+] on Build GRCm38 99
GenBankmRNA BY415351.1 - 3 - 4 223 Chr. 15 - 103243732 - 103246696 [+] on Build GRCm38 99
GenBankmRNA BM125632.1 - 1 - 2 Chr. 15 - 103246194 - 103246692 [-] on Build GRCm38 99


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream chromobox 5 Cbx5 2610029O15Rik, C75991, HP1, Hp1a, Hp1alpha -6.4kb Anti-sense Chr. - 103191546 - 103239904 on Build GRCm38
Downstream nuclear factor, erythroid derived 2 Nfe2 NF-E2, NF-E2/P45, p45, p45NFE2, p45nf-e2 1.5kb Anti-sense Chr. - 103248212 - 103258403 on Build GRCm38

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