Product Details

SNP ID

rs16948289

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.17:49604258 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

TTACTGTCTCCATTAAAAGCAAGTT[C/T]CCCCTGGTCAGAATTGAGGTAGACT

Phenotype

MIM: 602650

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

SPOP PubMed Links

Additional Information

For this assay, SNP(s) [rs16948287] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

SPOP

Gene Name

speckle type BTB/POZ protein

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001007226.1		Intron			NP_001007227.1
NM_001007227.1		Intron			NP_001007228.1
NM_001007228.1		Intron			NP_001007229.1
NM_001007229.1		Intron			NP_001007230.1
NM_001007230.1		Intron			NP_001007231.1
NM_003563.3		Intron			NP_003554.1
XM_005257723.4		Intron			XP_005257780.1
XM_005257724.4		Intron			XP_005257781.1
XM_017025204.1		Intron			XP_016880693.1

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