Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
JPX
Entrez Gene ID
554203
Gene Name
JPX transcript, XIST activator (non-protein coding)
Gene Aliases
DCBALD06, ENOX, LINC00183, NCRNA00183
Chromosome Location
Chr.X: 73944324 - 74070384 on Build GRCh38
Interrogated Sequence Translated Protein RNADB ID Exon Boundary Assay Location Amplicon Length
RefSeq NR_024582.1
1 - 2 148 103
GenBank mRNA AK056172.1 -
1 - 2 130 103
AV714079.1 - LIT1011
Jpx		 - 133 103
BC071776.1 -
1 - 2 144 103


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BG504771.1 - 1 - 2 127 Chr. X - 73944346 - 73947528 [+] on Build GRCh38 103
GenBankmRNA DA979750.1 - 1 - 2 121 Chr. X - 73944351 - 73947352 [+] on Build GRCh38 103
GenBankmRNA BM548256.1 - 180 Chr. - - [-] on Build 103
GenBankmRNA BP872745.1 - 1 - 2 127 Chr. X - 73944345 - 74004351 [+] on Build GRCh38 103
GenBankmRNA BP871836.1 - 1 - 2 126 Chr. X - 73944346 - 73947297 [+] on Build GRCh38 103
GenBankmRNA CN270680.1 - 1 - 2 113 Chr. X - 73944359 - 73999372 [+] on Build GRCh38 103
GenBankmRNA AW963219.1 - 120 Chr. - - [-] on Build 103
GenBankmRNA AV705096.1 - 1 - 2 83 Chr. X - 73944389 - 74004413 [+] on Build GRCh38 103
GenBankmRNA HY298090.1 - 2 - 3 Chr. X - 73944403 - 73947333 [-] on Build GRCh38 103
GenBankmRNA BU934969.1 - 1 - 2 128 Chr. X - 73944346 - 73999254 [+] on Build GRCh38 103
GenBankmRNA Z44786.1 - Chr. X - 123628779 - 123628794 [-] on Build GRCh38 103
GenBankmRNA AL711317.1 - 1 - 2 147 Chr. X - 73944324 - 73999368 [+] on Build GRCh38 103
GenBankmRNA BG612854.1 - 1 - 2 129 Chr. X - 73944343 - 73999478 [+] on Build GRCh38 103
GenBankmRNA HY065667.1 - 1 - 2 134 Chr. X - 73944340 - 74010499 [+] on Build GRCh38 103
GenBankmRNA CB993733.1 - 157 Chr. - - [-] on Build 103
GenBankmRNA BP872499.1 - 1 - 2 148 Chr. X - 73944324 - 74004351 [+] on Build GRCh38 103
GenBankmRNA BP873595.1 - 1 - 2 130 Chr. X - 73944342 - 74004351 [+] on Build GRCh38 103
GenBankmRNA DB255033.1 - 1 - 2 Chr. X - 73944339 - 73947366 [+] on Build GRCh38 104
GenBankmRNA BP872256.1 - 1 - 2 127 Chr. X - 73944345 - 74004351 [+] on Build GRCh38 103
GenBankmRNA CF129475.1 - 1 - 2 113 Chr. X - 73944359 - 74004553 [+] on Build GRCh38 103
GenBankmRNA F12346.1 - 89 Chr. - - [-] on Build 103
GenBankmRNA DA363254.1 - 1 - 2 147 Chr. X - 73944326 - 73997077 [+] on Build GRCh38 103
GenBankmRNA DA106100.1 - 1 - 2 130 Chr. X - 73944342 - 74004417 [+] on Build GRCh38 103
GenBankmRNA CN263834.1 - 1 - 2 116 Chr. X - 73944356 - 73999314 [+] on Build GRCh38 103
GenBankmRNA HY103315.1 - 1 - 2 130 Chr. X - 73944342 - 73947268 [+] on Build GRCh38 103
GenBankmRNA BM810643.1 - 103 Chr. - - [-] on Build 103
GenBankmRNA BU164379.1 - 1 - 2 123 Chr. X - 73944349 - 73998832 [+] on Build GRCh38 103
GenBankmRNA BP871739.1 - 1 - 2 127 Chr. X - 73944345 - 74004345 [+] on Build GRCh38 103
GenBankmRNA BP872588.1 - 1 - 2 127 Chr. X - 73944345 - 74004345 [+] on Build GRCh38 103
GenBankmRNA DA841100.1 - 1 - 2 127 Chr. X - 73944345 - 73947361 [+] on Build GRCh38 103
GenBankmRNA BP871919.1 - 1 - 2 128 Chr. X - 73944344 - 73999613 [+] on Build GRCh38 103
GenBankmRNA BG613915.1 - 1 - 2 131 Chr. X - 73944342 - 73999860 [+] on Build GRCh38 103
GenBankmRNA AL708895.1 - 1 - 2 135 Chr. X - 73944338 - 73947333 [+] on Build GRCh38 103
GenBankmRNA BU537716.1 - 1 - 2 142 Chr. X - 73944333 - 73947334 [+] on Build GRCh38 103
GenBankmRNA BP871940.1 - 1 - 2 127 Chr. X - 73944345 - 74004351 [+] on Build GRCh38 103
GenBankmRNA DA331725.1 - 1 - 2 130 Chr. X - 73944342 - 74004540 [+] on Build GRCh38 103
GenBankmRNA BP873466.1 - 1 - 2 148 Chr. X - 73944324 - 73999111 [+] on Build GRCh38 103
GenBankmRNA BP871783.1 - 1 - 2 127 Chr. X - 73944345 - 74004351 [+] on Build GRCh38 103
GenBankmRNA R19849.1 - 1 - 2 111 Chr. X - 73944385 - 74047792 [+] on Build GRCh38 103
GenBankmRNA HY088843.1 - 1 - 2 134 Chr. X - 73944340 - 74010567 [+] on Build GRCh38 103
GenBankmRNA HY172225.1 - 1 - 2 131 Chr. X - 73944342 - 73999019 [+] on Build GRCh38 103
GenBankmRNA BP872277.1 - 1 - 2 148 Chr. X - 73944324 - 73999592 [+] on Build GRCh38 103
GenBankmRNA DA103086.1 - 1 - 2 129 Chr. X - 73944343 - 74004499 [+] on Build GRCh38 103
GenBankmRNA BG435566.1 - 1 - 2 145 Chr. X - 73944328 - 74069325 [+] on Build GRCh38 103
GenBankmRNA BU589636.1 - 1 - 2 129 Chr. X - 73944346 - 73944948 [+] on Build GRCh38 103
GenBankmRNA DA427047.1 - 1 - 2 146 Chr. X - 73944326 - 73947342 [+] on Build GRCh38 103
GenBankmRNA CB991754.1 - 157 Chr. - - [-] on Build 103
GenBankmRNA DB240432.1 - 1 - 2 126 Chr. X - 73944346 - 73947385 [+] on Build GRCh38 103
GenBankmRNA DA679611.1 - 1 - 2 130 Chr. X - 73944342 - 73999105 [+] on Build GRCh38 103
GenBankmRNA DA881370.1 - 1 - 2 125 Chr. X - 73944347 - 73999014 [+] on Build GRCh38 103
GenBankmRNA C16093.1 - 1 66 Chr. 3 - 71682388 - 71682656 [-] on Build GRCh38 103
GenBankmRNA BP873513.1 - 1 - 2 127 Chr. X - 73944345 - 74004351 [+] on Build GRCh38 103
GenBankmRNA DA731241.1 - 1 - 2 146 Chr. X - 73944326 - 73998845 [+] on Build GRCh38 103
GenBankmRNA T32551.1 - 119 Chr. 15 - 42410703 - 42410722 [-] on Build GRCh38 103
GenBankmRNA BP872419.1 - 1 - 2 148 Chr. X - 73944324 - 74004351 [+] on Build GRCh38 103
GenBankmRNA DB250056.1 - 1 - 2 126 Chr. X - 73944346 - 73999096 [+] on Build GRCh38 103
GenBankmRNA DA700446.1 - 1 - 2 130 Chr. X - 73944342 - 73947318 [+] on Build GRCh38 103
GenBankmRNA BF686802.1 - 111 Chr. - - [-] on Build 103
GenBankmRNA BG427198.1 - 1 - 2 131 Chr. X - 73944342 - 73995436 [+] on Build GRCh38 103
GenBankmRNA DW450219.1 - 1 - 2 143 Chr. X - 73944342 - 73944645 [+] on Build GRCh38 103
GenBankmRNA DW466961.1 - 1 - 2 145 Chr. X - 73944340 - 73994872 [+] on Build GRCh38 103
GenBankmRNA BP871862.1 - 1 - 2 132 Chr. X - 73944340 - 73947374 [+] on Build GRCh38 103
GenBankmRNA BP873504.1 - 1 - 2 124 Chr. X - 73944356 - 74004351 [+] on Build GRCh38 103
GenBankmRNA BP872587.1 - 1 - 2 128 Chr. X - 73944344 - 74004351 [+] on Build GRCh38 103
GenBankmRNA HY081032.1 - 1 - 2 133 Chr. X - 73944339 - 73947244 [+] on Build GRCh38 103
GenBankmRNA BP873185.1 - 1 - 2 128 Chr. X - 73944344 - 74004355 [+] on Build GRCh38 103
GenBankmRNA H84526.1 - 108 Chr. - - [-] on Build 103
GenBankmRNA BU599790.1 - 1 - 2 133 Chr. X - 73944340 - 74004542 [+] on Build GRCh38 103
GenBankmRNA BP872964.1 - 1 - 2 127 Chr. X - 73944345 - 74004351 [+] on Build GRCh38 103
GenBankmRNA BF797301.1 - 1 - 2 115 Chr. X - 73944357 - 73999368 [+] on Build GRCh38 103
GenBankmRNA R27273.1 - 112 Chr. - - [-] on Build 103
GenBankmRNA BP872836.1 - 1 - 2 128 Chr. X - 73944344 - 74004351 [+] on Build GRCh38 103
GenBankmRNA DB210310.1 - 1 - 2 Chr. X - 73944332 - 73999117 [+] on Build GRCh38 104
GenBankmRNA DA711535.1 - 1 - 2 131 Chr. X - 73944342 - 73947373 [+] on Build GRCh38 103
GenBankmRNA CB998281.1 - 157 Chr. - - [-] on Build 103
GenBankmRNA BM973890.1 - 3 - 4 Chr. X - 73944351 - 74004553 [-] on Build GRCh38 103
GenBankmRNA BP872490.1 - 1 - 2 128 Chr. X - 73944344 - 74004345 [+] on Build GRCh38 103
GenBankmRNA BF514490.1 - 2 - 3 Chr. X - 73944351 - 74004553 [-] on Build GRCh38 103


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream X inactive specific transcript (non-protein coding) XIST DXS1089, DXS399E, LINC00001, NCRNA00001, SXI1, swd66 -91.6kb Anti-sense Chr. - 73820651 - 73852753 on Build GRCh38
Downstream FTX transcript, XIST regulator (non-protein coding) FTX LINC00182, MIR374AHG, NCRNA00182 83.5kb Anti-sense Chr. - 74028136 - 74293574 on Build GRCh38

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