Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
TPTEP1
Entrez Gene ID
387590
Gene Name
transmembrane phosphatase with tensin homology pseudogene 1
Gene Aliases
psiTPTE22
Chromosome Location
Chr.22: 16601911 - 16648830 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_001591.1 1 - 1 257 127
GenBank mRNA AK001299.1 - 1 - 1 281 127
AK226145.1 - 1 - 1 124 127
AY219889.1 - 1 - 1 257 127
EU541207.1 - 1 - 1 222 127
EU541208.1 - 1 - 1 222 127


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DA868880.1 - 1 266 Chr. 22 - 16601903 - 16638744 [+] on Build GRCh38 128
GenBankmRNA BG333521.1 - 1 260 Chr. 22 - 16601911 - 16614237 [+] on Build GRCh38 129
GenBankmRNA BG614620.1 - 1 275 Chr. 22 - 16601892 - 16611878 [+] on Build GRCh38 126
GenBankmRNA DR004963.1 - 1 271 Chr. 22 - 16601918 - 16648683 [+] on Build GRCh38 127
GenBankmRNA AI492518.1 - 1 116 Chr. 22 - 16602052 - 16611866 [+] on Build GRCh38 127
GenBankmRNA BX956068.1 - 1 272 Chr. 22 - 16601896 - 16614099 [+] on Build GRCh38 127
GenBankmRNA DB126965.1 - 1 265 Chr. 22 - 16601903 - 16648614 [+] on Build GRCh38 127
GenBankmRNA DA281648.1 - 1 219 Chr. 22 - 16601950 - 16648546 [+] on Build GRCh38 127
GenBankmRNA HY028871.1 - 1 272 Chr. 22 - 16601896 - 16648567 [+] on Build GRCh38 127
GenBankmRNA HY004763.1 - 1 285 Chr. 22 - 16601883 - 16611796 [+] on Build GRCh38 127
GenBankmRNA DR004418.1 - 1 269 Chr. 22 - 16601920 - 16614123 [+] on Build GRCh38 127
GenBankmRNA DB222954.1 - 1 221 Chr. 22 - 16601947 - 16614146 [+] on Build GRCh38 127
GenBankmRNA AI216041.1 - 1 116 Chr. 22 - 16602052 - 16611745 [+] on Build GRCh38 127
GenBankmRNA AW572313.1 - 1 147 Chr. 22 - 16602021 - 16614178 [+] on Build GRCh38 127
GenBankmRNA DA903104.1 - 1 265 Chr. 22 - 16601903 - 16647694 [+] on Build GRCh38 127


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream chaperonin containing TCP1 subunit 8 like 2 CCT8L2 CESK1 -9.1kb Anti-sense Chr. - 16590758 - 16592810 on Build GRCh38
Downstream ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene ANKRD62P1-PARP4P3 VWFP1-ANKRD62P1-PARP4P3 51.5kb Anti-sense Chr. - 16653708 - 16675540 on Build GRCh38

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