Product Details

SNP ID

rs241600

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.20:3930623 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

ATCACTCTCTGCCTGGAGCTCTGGG[G/T]ATACTGCCCTGGATGTATCAGGATG

Phenotype

MIM: 606157 MIM: 612489

Polymorphism

G/T, Transversion Substitution

Allele Nomenclature

Literature Links

PANK2 PubMed Links

Additional Information

For this assay, SNP(s) [rs115108637] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

PANK2

Gene Name

pantothenate kinase 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001324191.1	4294	Intron			NP_001311120.1
NM_001324192.1	4294	Intron			NP_001311121.1
NM_001324193.1	4294	Intron			NP_001311122.1
NM_024960.5	4294	Intron			NP_079236.3
NM_153638.3	4294	Intron			NP_705902.2
NM_153640.3	4294	Intron			NP_705904.1
XM_005260835.3	4294	Intron			XP_005260892.1
XM_005260836.4	4294	Intron			XP_005260893.3
XM_011529364.2	4294	Intron			XP_011527666.1
XM_011529365.2	4294	Intron			XP_011527667.1
XM_017028077.1	4294	Intron			XP_016883566.1
XM_017028078.1	4294	Intron			XP_016883567.1
XM_017028079.1	4294	Intron			XP_016883568.1

Gene

RNF24

Gene Name

ring finger protein 24

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001134337.2	4294	UTR 3			NP_001127809.1
NM_001134338.2	4294	UTR 3			NP_001127810.1
NM_001321749.1	4294	UTR 3			NP_001308678.1
NM_007219.4	4294	UTR 3			NP_009150.1
XM_011529145.2	4294	UTR 3			XP_011527447.1
XM_011529146.2	4294	UTR 3			XP_011527448.1
XM_011529147.2	4294	Intron			XP_011527449.1
XM_017027620.1	4294	UTR 3			XP_016883109.1
XM_017027621.1	4294	UTR 3			XP_016883110.1
XM_017027622.1	4294	Intron			XP_016883111.1

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