Product Details

Primer Sequences

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Primer Chromosome Location

Chr.9: 61441054-61440507 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

CNTNAP3

Entrez Gene ID

79937

Gene Name

contactin associated protein-like 3

Gene Aliases

CASPR3, CNTNAP3A

UniGene

Hs.128474

Gene Chromosome Location

Chr.9: 39072767-39288303 on Build GRCh38

Transcripts

NM_033655.3 XM_011545672.2 XM_011545673.2 XM_011545674.2 XM_017015380.1

Gene Symbol

LOC100289279

Entrez Gene ID

100289279

Gene Name

contactin associated protein-like 3-like

Gene Aliases

-

UniGene

Hs.571598

Gene Chromosome Location

Chr.9: 61330592-61461349 on Build GRCh38

Transcripts

NM_033655.3 XM_011545672.2 XM_011545673.2 XM_011545674.2 XM_017015380.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
4782507	c.281A>G	p.E94G	Chr.9: 39178354-39178354 on Build GRCh38
3907453	c.593A>G	p.K198R	Chr.9: 39178306-39178306 on Build GRCh38
4374486	c.354C>T	p.D118D	Chr.9: 39178281-39178281 on Build GRCh38
1314844	c.539-1G>C	p.?	Chr.9: 39178361-39178361 on Build GRCh38
4893996	c.589G>A	p.D197N	Chr.9: 39178310-39178310 on Build GRCh38
3657535	c.439G>A	p.E147K	Chr.9: 39178196-39178196 on Build GRCh38
3907458	c.279T>G	p.S93S	Chr.9: 39178356-39178356 on Build GRCh38
4782802	c.465T>G	p.F155L	Chr.9: 39178170-39178170 on Build GRCh38
5905258	c.539-1G>A	p.?	Chr.9: 39178361-39178361 on Build GRCh38
1462479	c.729T>G	p.F243L	Chr.9: 39178170-39178170 on Build GRCh38
3780761	c.334C>A	p.P112T	Chr.9: 39178301-39178301 on Build GRCh38
3657536	c.439G>A	p.E147K	Chr.9: 39178196-39178196 on Build GRCh38
5905259	c.275-1G>A	p.?	Chr.9: 39178361-39178361 on Build GRCh38
4893997	c.325G>A	p.D109N	Chr.9: 39178310-39178310 on Build GRCh38
5651136	c.409G>A	p.E137K	Chr.9: 39178226-39178226 on Build GRCh38
3657531	c.734T>A	p.L245H	Chr.9: 39178165-39178165 on Build GRCh38
1109171	c.643A>G	p.M215V	Chr.9: 39178256-39178256 on Build GRCh38
3657537	c.667C>T	p.H223Y	Chr.9: 39178232-39178232 on Build GRCh38
1109173	c.599C>T	p.P200L	Chr.9: 39178300-39178300 on Build GRCh38
4454912	c.610A>T	p.I204L	Chr.9: 39178289-39178289 on Build GRCh38
4893998	c.325G>A	p.D109N	Chr.9: 39178310-39178310 on Build GRCh38
3780759	c.598C>A	p.P200T	Chr.9: 39178301-39178301 on Build GRCh38
3433158	c.370T>G	p.F124V	Chr.9: 39178265-39178265 on Build GRCh38
4454913	c.346A>T	p.I116L	Chr.9: 39178289-39178289 on Build GRCh38
4875483	c.379A>G	p.M127V	Chr.9: 39178256-39178256 on Build GRCh38
6384387	c.343C>T	p.P115S	Chr.9: 39178292-39178292 on Build GRCh38
1756183	c.559G>C	p.D187H	Chr.9: 39178340-39178340 on Build GRCh38
3907454	c.329A>G	p.K110R	Chr.9: 39178306-39178306 on Build GRCh38
4870112	c.335C>T	p.P112L	Chr.9: 39178300-39178300 on Build GRCh38
4870113	c.335C>T	p.P112L	Chr.9: 39178300-39178300 on Build GRCh38
5516483	c.742+9delA	p.?	Chr.9: 39178148-39178148 on Build GRCh38
6384388	c.343C>T	p.P115S	Chr.9: 39178292-39178292 on Build GRCh38
4868590	c.352G>T	p.D118Y	Chr.9: 39178283-39178283 on Build GRCh38
4374485	c.354C>T	p.D118D	Chr.9: 39178281-39178281 on Build GRCh38
5651134	c.673G>A	p.E225K	Chr.9: 39178226-39178226 on Build GRCh38
5516484	c.478+9delA	p.?	Chr.9: 39178148-39178148 on Build GRCh38
4864060	c.320G>A	p.R107K	Chr.9: 39178315-39178315 on Build GRCh38
6631940	c.333delA	p.K111fs*3	Chr.9: 39178302-39178302 on Build GRCh38
4782803	c.465T>G	p.F155L	Chr.9: 39178170-39178170 on Build GRCh38
3780760	c.334C>A	p.P112T	Chr.9: 39178301-39178301 on Build GRCh38
4454914	c.346A>T	p.I116L	Chr.9: 39178289-39178289 on Build GRCh38
3907456	c.543T>G	p.S181S	Chr.9: 39178356-39178356 on Build GRCh38
3657538	c.403C>T	p.H135Y	Chr.9: 39178232-39178232 on Build GRCh38
6115884	c.383A>C	p.Q128P	Chr.9: 39178252-39178252 on Build GRCh38
4901580	c.627T>A	p.S209S	Chr.9: 39178272-39178272 on Build GRCh38
4812166	c.275-1G>C	p.?	Chr.9: 39178361-39178361 on Build GRCh38
4007207	c.295G>C	p.D99H	Chr.9: 39178340-39178340 on Build GRCh38
3657532	c.470T>A	p.L157H	Chr.9: 39178165-39178165 on Build GRCh38
6631939	c.333delA	p.K111fs*3	Chr.9: 39178302-39178302 on Build GRCh38
3907455	c.329A>G	p.K110R	Chr.9: 39178306-39178306 on Build GRCh38
4007206	c.295G>C	p.D99H	Chr.9: 39178340-39178340 on Build GRCh38
6384386	c.607C>T	p.P203S	Chr.9: 39178292-39178292 on Build GRCh38
4782506	c.281A>G	p.E94G	Chr.9: 39178354-39178354 on Build GRCh38
3848574	c.366G>C	p.L122F	Chr.9: 39178269-39178269 on Build GRCh38
6115885	c.383A>C	p.Q128P	Chr.9: 39178252-39178252 on Build GRCh38
3657539	c.403C>T	p.H135Y	Chr.9: 39178232-39178232 on Build GRCh38
2776298	c.618C>T	p.D206D	Chr.9: 39178281-39178281 on Build GRCh38
5905260	c.275-1G>A	p.?	Chr.9: 39178361-39178361 on Build GRCh38
3657533	c.470T>A	p.L157H	Chr.9: 39178165-39178165 on Build GRCh38
4901581	c.363T>A	p.S121S	Chr.9: 39178272-39178272 on Build GRCh38
1569959	c.545A>G	p.E182G	Chr.9: 39178354-39178354 on Build GRCh38
5516485	c.478+9delA	p.?	Chr.9: 39178148-39178148 on Build GRCh38
3657534	c.703G>A	p.E235K	Chr.9: 39178196-39178196 on Build GRCh38
1109172	c.616G>T	p.D206Y	Chr.9: 39178283-39178283 on Build GRCh38
4875482	c.379A>G	p.M127V	Chr.9: 39178256-39178256 on Build GRCh38
4901582	c.363T>A	p.S121S	Chr.9: 39178272-39178272 on Build GRCh38
1109174	c.584G>A	p.R195K	Chr.9: 39178315-39178315 on Build GRCh38
6115883	c.647A>C	p.Q216P	Chr.9: 39178252-39178252 on Build GRCh38
3433156	c.634T>G	p.F212V	Chr.9: 39178265-39178265 on Build GRCh38
3907457	c.279T>G	p.S93S	Chr.9: 39178356-39178356 on Build GRCh38
6631938	c.597delA	p.K199fs*3	Chr.9: 39178302-39178302 on Build GRCh38
343386	c.692A>T	p.H231L	Chr.9: 39178207-39178207 on Build GRCh38
5651135	c.409G>A	p.E137K	Chr.9: 39178226-39178226 on Build GRCh38
4864061	c.320G>A	p.R107K	Chr.9: 39178315-39178315 on Build GRCh38
4868589	c.352G>T	p.D118Y	Chr.9: 39178283-39178283 on Build GRCh38
3848572	c.630G>C	p.L210F	Chr.9: 39178269-39178269 on Build GRCh38
3848573	c.366G>C	p.L122F	Chr.9: 39178269-39178269 on Build GRCh38
3433157	c.370T>G	p.F124V	Chr.9: 39178265-39178265 on Build GRCh38
4812167	c.275-1G>C	p.?	Chr.9: 39178361-39178361 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs763807451	Chr.9: 39178310-39178310 on Build GRCh38
rs766875784	Chr.9: 39178152-39178152 on Build GRCh38
rs769725615	Chr.9: 39178369-39178369 on Build GRCh38
rs995727136	Chr.9: 39178335-39178335 on Build GRCh38
rs557546106	Chr.9: 39178361-39178361 on Build GRCh38
rs768848850	Chr.9: 39178246-39178246 on Build GRCh38
rs774329404	Chr.9: 39178286-39178287 on Build GRCh38
rs549376490	Chr.9: 39178079-39178079 on Build GRCh38
rs769386252	Chr.9: 39178115-39178115 on Build GRCh38
rs756830274	Chr.9: 39178211-39178211 on Build GRCh38
rs779852898	Chr.9: 39178143-39178143 on Build GRCh38
rs566034184	Chr.9: 39178040-39178060 on Build GRCh38
rs369225761	Chr.9: 39178379-39178379 on Build GRCh38
rs769970096	Chr.9: 39178264-39178264 on Build GRCh38
rs578142584	Chr.9: 39178147-39178148 on Build GRCh38
rs959004086	Chr.9: 39178011-39178011 on Build GRCh38
rs778693883	Chr.9: 39178216-39178216 on Build GRCh38
rs192954547	Chr.9: 39177957-39177957 on Build GRCh38
rs777362049	Chr.9: 39178201-39178201 on Build GRCh38
rs755833786	Chr.9: 39178195-39178195 on Build GRCh38
rs561670563	Chr.9: 39178426-39178426 on Build GRCh38
rs758342213	Chr.9: 39178339-39178339 on Build GRCh38
rs750982412	Chr.9: 39178139-39178139 on Build GRCh38
rs142084446	Chr.9: 39177971-39177971 on Build GRCh38
rs868329353	Chr.9: 39178222-39178222 on Build GRCh38
rs2453923	Chr.9: 39178281-39178281 on Build GRCh38
rs185268673	Chr.9: 39178030-39178030 on Build GRCh38
rs771553064	Chr.9: 39178387-39178387 on Build GRCh38
rs781373526	Chr.9: 39178364-39178364 on Build GRCh38
rs1037201730	Chr.9: 39178282-39178282 on Build GRCh38
rs747174408	Chr.9: 39178242-39178242 on Build GRCh38
rs917700709	Chr.9: 39178053-39178053 on Build GRCh38
rs768625675	Chr.9: 39178148-39178148 on Build GRCh38
rs538154386	Chr.9: 39178235-39178235 on Build GRCh38
rs527847692	Chr.9: 39177938-39177938 on Build GRCh38
rs760736211	Chr.9: 39178301-39178302 on Build GRCh38
rs566980915	Chr.9: 39177974-39177974 on Build GRCh38
rs762007416	Chr.9: 39178125-39178125 on Build GRCh38
rs776703459	Chr.9: 39178112-39178112 on Build GRCh38
rs142846633	Chr.9: 39178263-39178263 on Build GRCh38
rs556487378	Chr.9: 39178260-39178260 on Build GRCh38
rs749217951	Chr.9: 39178225-39178226 on Build GRCh38
rs773347791	Chr.9: 39178373-39178373 on Build GRCh38
rs966494435	Chr.9: 39178424-39178424 on Build GRCh38
rs748678513	Chr.9: 39178325-39178325 on Build GRCh38
rs757240886	Chr.9: 39178289-39178289 on Build GRCh38
rs1692900	Chr.9: 39177949-39177949 on Build GRCh38
rs752358251	Chr.9: 39178166-39178166 on Build GRCh38
rs763547561	Chr.9: 39178288-39178288 on Build GRCh38
rs376576773	Chr.9: 39178344-39178344 on Build GRCh38
rs753393667	Chr.9: 39178206-39178206 on Build GRCh38
rs759955606	Chr.9: 39178409-39178409 on Build GRCh38
rs138164531	Chr.9: 39178218-39178218 on Build GRCh38
rs966861840	Chr.9: 39178056-39178056 on Build GRCh38
rs1004424568	Chr.9: 39177942-39177942 on Build GRCh38
rs775066112	Chr.9: 39178397-39178397 on Build GRCh38
rs756673784	Chr.9: 39178316-39178316 on Build GRCh38
rs936604746	Chr.9: 39178105-39178105 on Build GRCh38
rs925074951	Chr.9: 39178090-39178090 on Build GRCh38
rs1032195735	Chr.9: 39178436-39178436 on Build GRCh38
rs2260583	Chr.9: 39178315-39178315 on Build GRCh38
rs539804227	Chr.9: 39178417-39178417 on Build GRCh38
rs750257435	Chr.9: 39178320-39178320 on Build GRCh38
rs760037426	Chr.9: 39178304-39178304 on Build GRCh38
rs771721260	Chr.9: 39178224-39178224 on Build GRCh38
rs765660969	Chr.9: 39178133-39178133 on Build GRCh38
rs758672492	Chr.9: 39178144-39178144 on Build GRCh38
rs746799102	Chr.9: 39178355-39178355 on Build GRCh38
rs1033322982	Chr.9: 39178005-39178005 on Build GRCh38
rs557939435	Chr.9: 39178114-39178115 on Build GRCh38
rs1051092632	Chr.9: 39178256-39178256 on Build GRCh38
rs751988059	Chr.9: 39178301-39178301 on Build GRCh38
rs962999094	Chr.9: 39177964-39177964 on Build GRCh38

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