Product Details

Primer Sequences

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Primer Chromosome Location

Chr.6: 70232393-70232934 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

COL9A1

Entrez Gene ID

1297

Gene Name

collagen type IX alpha 1

Gene Aliases

DJ149L1.1.2, EDM6, MED, STL4

UniGene

Hs.590892

Gene Chromosome Location

Chr.6: 70216040-70303083 on Build GRCh38

Transcripts

NM_001851.4 NM_078485.3 XM_011535429.2 XM_011535430.2 XM_017010246.1 XM_017010247.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
3366586	c.1735A>T	p.K579*	Chr.6: 70232622-70232622 on Build GRCh38
5996873	c.1757G>C	p.G586A	Chr.6: 70232600-70232600 on Build GRCh38
451744	c.2402C>T	p.P801L	Chr.6: 70232684-70232684 on Build GRCh38
4786705	c.1674C>T	p.P558P	Chr.6: 70232683-70232683 on Build GRCh38
5699397	c.1678C>A	p.P560T	Chr.6: 70232679-70232679 on Build GRCh38
1697510	c.1687G>A	p.E563K	Chr.6: 70232670-70232670 on Build GRCh38
5996872	c.2486G>C	p.G829A	Chr.6: 70232600-70232600 on Build GRCh38
3922085	c.1738G>A	p.G580R	Chr.6: 70232619-70232619 on Build GRCh38
4779681	c.1737G>A	p.K579K	Chr.6: 70232620-70232620 on Build GRCh38
3629322	c.2498C>T	p.P833L	Chr.6: 70232588-70232588 on Build GRCh38
3922083	c.2467G>A	p.G823R	Chr.6: 70232619-70232619 on Build GRCh38
6174677	c.1631G>T	p.G544V	Chr.6: 70232726-70232726 on Build GRCh38
4814426	c.1673C>T	p.P558L	Chr.6: 70232684-70232684 on Build GRCh38
6576905	c.1741C>T	p.P581S	Chr.6: 70232616-70232616 on Build GRCh38
3875198	c.1728G>A	p.P576P	Chr.6: 70232629-70232629 on Build GRCh38
5524774	c.1742C>T	p.P581L	Chr.6: 70232615-70232615 on Build GRCh38
3366584	c.2464A>T	p.K822*	Chr.6: 70232622-70232622 on Build GRCh38
3875200	c.2394T>C	p.P798P	Chr.6: 70232692-70232692 on Build GRCh38
5524773	c.1742C>T	p.P581L	Chr.6: 70232615-70232615 on Build GRCh38
6174680	c.1649G>T	p.G550V	Chr.6: 70232708-70232708 on Build GRCh38
743256	c.2446C>G	p.R816G	Chr.6: 70232640-70232640 on Build GRCh38
3875199	c.1728G>A	p.P576P	Chr.6: 70232629-70232629 on Build GRCh38
4757111	c.1727C>T	p.P576L	Chr.6: 70232630-70232630 on Build GRCh38
4757112	c.1727C>T	p.P576L	Chr.6: 70232630-70232630 on Build GRCh38
5699395	c.2407C>A	p.P803T	Chr.6: 70232679-70232679 on Build GRCh38
6174675	c.2360G>T	p.G787V	Chr.6: 70232726-70232726 on Build GRCh38
3949434	c.1742C>A	p.P581H	Chr.6: 70232615-70232615 on Build GRCh38
6174676	c.1631G>T	p.G544V	Chr.6: 70232726-70232726 on Build GRCh38
1634907	c.1737G>A	p.K579K	Chr.6: 70232620-70232620 on Build GRCh38
3366585	c.1735A>T	p.K579*	Chr.6: 70232622-70232622 on Build GRCh38
1150469	c.1717C>G	p.R573G	Chr.6: 70232640-70232640 on Build GRCh38
1697509	c.2416G>A	p.E806K	Chr.6: 70232670-70232670 on Build GRCh38
451743	c.2403C>T	p.P801P	Chr.6: 70232683-70232683 on Build GRCh38
6471372	c.1612C>A	p.L538I	Chr.6: 70232745-70232745 on Build GRCh38
1445681	c.1674C>T	p.P558P	Chr.6: 70232683-70232683 on Build GRCh38
3629323	c.1769C>T	p.P590L	Chr.6: 70232588-70232588 on Build GRCh38
5524772	c.2471C>T	p.P824L	Chr.6: 70232615-70232615 on Build GRCh38
3949433	c.2471C>A	p.P824H	Chr.6: 70232615-70232615 on Build GRCh38
1487890	c.1673C>T	p.P558L	Chr.6: 70232684-70232684 on Build GRCh38
3629324	c.1769C>T	p.P590L	Chr.6: 70232588-70232588 on Build GRCh38
4858911	c.1717C>G	p.R573G	Chr.6: 70232640-70232640 on Build GRCh38
3875201	c.1665T>C	p.P555P	Chr.6: 70232692-70232692 on Build GRCh38
5699396	c.1678C>A	p.P560T	Chr.6: 70232679-70232679 on Build GRCh38
3949435	c.1742C>A	p.P581H	Chr.6: 70232615-70232615 on Build GRCh38
372292	c.2382G>T	p.R794S	Chr.6: 70232704-70232704 on Build GRCh38
69053	c.2330_2354del25	p.M777fs*46	Chr.6: 70232732-70232756 on Build GRCh38
6471371	c.2341C>A	p.L781I	Chr.6: 70232745-70232745 on Build GRCh38
4674081	c.2446C>T	p.R816C	Chr.6: 70232640-70232640 on Build GRCh38
3875197	c.2457G>A	p.P819P	Chr.6: 70232629-70232629 on Build GRCh38
6576903	c.2470C>T	p.P824S	Chr.6: 70232616-70232616 on Build GRCh38
3922084	c.1738G>A	p.G580R	Chr.6: 70232619-70232619 on Build GRCh38
6576904	c.1741C>T	p.P581S	Chr.6: 70232616-70232616 on Build GRCh38
5996874	c.1757G>C	p.G586A	Chr.6: 70232600-70232600 on Build GRCh38
1634906	c.2466G>A	p.K822K	Chr.6: 70232620-70232620 on Build GRCh38
3875202	c.1665T>C	p.P555P	Chr.6: 70232692-70232692 on Build GRCh38
6471373	c.1612C>A	p.L538I	Chr.6: 70232745-70232745 on Build GRCh38
6174679	c.1649G>T	p.G550V	Chr.6: 70232708-70232708 on Build GRCh38
4674083	c.1717C>T	p.R573C	Chr.6: 70232640-70232640 on Build GRCh38
4674082	c.1717C>T	p.R573C	Chr.6: 70232640-70232640 on Build GRCh38
4757110	c.2456C>T	p.P819L	Chr.6: 70232630-70232630 on Build GRCh38
6174678	c.2378G>T	p.G793V	Chr.6: 70232708-70232708 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs896106778	Chr.6: 70232529-70232529 on Build GRCh38
rs34119578	Chr.6: 70232616-70232616 on Build GRCh38
rs757620185	Chr.6: 70232629-70232629 on Build GRCh38
rs554442935	Chr.6: 70232490-70232490 on Build GRCh38
rs375684014	Chr.6: 70232738-70232738 on Build GRCh38
rs749231567	Chr.6: 70232823-70232823 on Build GRCh38
rs972916458	Chr.6: 70232767-70232767 on Build GRCh38
rs182052281	Chr.6: 70232834-70232834 on Build GRCh38
rs923041425	Chr.6: 70232889-70232889 on Build GRCh38
rs1049217906	Chr.6: 70232541-70232541 on Build GRCh38
rs961616754	Chr.6: 70232444-70232444 on Build GRCh38
rs930272823	Chr.6: 70232528-70232528 on Build GRCh38
rs961499099	Chr.6: 70232751-70232751 on Build GRCh38
rs764624908	Chr.6: 70232594-70232594 on Build GRCh38
rs375886220	Chr.6: 70232555-70232555 on Build GRCh38
rs910283521	Chr.6: 70232542-70232542 on Build GRCh38
rs777634301	Chr.6: 70232819-70232819 on Build GRCh38
rs527945609	Chr.6: 70232688-70232688 on Build GRCh38
rs752197248	Chr.6: 70232783-70232783 on Build GRCh38
rs751254245	Chr.6: 70232635-70232635 on Build GRCh38
rs771141590	Chr.6: 70232817-70232818 on Build GRCh38
rs74699744	Chr.6: 70232514-70232514 on Build GRCh38
rs1057494383	Chr.6: 70232520-70232520 on Build GRCh38
rs144581626	Chr.6: 70232630-70232630 on Build GRCh38
rs566003668	Chr.6: 70232750-70232750 on Build GRCh38
rs775466585	Chr.6: 70232687-70232687 on Build GRCh38
rs767229176	Chr.6: 70232753-70232753 on Build GRCh38
rs755614368	Chr.6: 70232797-70232797 on Build GRCh38
rs201159365	Chr.6: 70232591-70232591 on Build GRCh38
rs780851685	Chr.6: 70232640-70232640 on Build GRCh38
rs774610828	Chr.6: 70232682-70232682 on Build GRCh38
rs1014122856	Chr.6: 70232726-70232726 on Build GRCh38
rs368426763	Chr.6: 70232537-70232537 on Build GRCh38
rs752717596	Chr.6: 70232563-70232563 on Build GRCh38
rs867488468	Chr.6: 70232517-70232517 on Build GRCh38
rs373877078	Chr.6: 70232721-70232721 on Build GRCh38
rs947055932	Chr.6: 70232840-70232840 on Build GRCh38
rs777744864	Chr.6: 70232665-70232665 on Build GRCh38
rs771103997	Chr.6: 70232543-70232543 on Build GRCh38
rs754596057	Chr.6: 70232639-70232639 on Build GRCh38
rs1022948354	Chr.6: 70232534-70232534 on Build GRCh38
rs1043172574	Chr.6: 70232852-70232852 on Build GRCh38
rs530239619	Chr.6: 70232886-70232886 on Build GRCh38
rs754706930	Chr.6: 70232746-70232746 on Build GRCh38
rs749074294	Chr.6: 70232679-70232679 on Build GRCh38
rs747652928	Chr.6: 70232647-70232647 on Build GRCh38
rs770705023	Chr.6: 70232680-70232680 on Build GRCh38
rs975062720	Chr.6: 70232798-70232798 on Build GRCh38
rs945181616	Chr.6: 70232897-70232897 on Build GRCh38
rs747230904	Chr.6: 70232777-70232778 on Build GRCh38
rs762152784	Chr.6: 70232697-70232697 on Build GRCh38
rs759764758	Chr.6: 70232683-70232683 on Build GRCh38
rs561098568	Chr.6: 70232854-70232854 on Build GRCh38
rs1012860761	Chr.6: 70232531-70232531 on Build GRCh38
rs147095719	Chr.6: 70232685-70232685 on Build GRCh38
rs141830060	Chr.6: 70232650-70232650 on Build GRCh38
rs748515682	Chr.6: 70232442-70232442 on Build GRCh38
rs372626522	Chr.6: 70232545-70232545 on Build GRCh38
rs142257977	Chr.6: 70232513-70232513 on Build GRCh38
rs1040487573	Chr.6: 70232862-70232863 on Build GRCh38
rs992324331	Chr.6: 70232441-70232441 on Build GRCh38
rs765684676	Chr.6: 70232705-70232705 on Build GRCh38
rs770189715	Chr.6: 70232860-70232860 on Build GRCh38
rs959746959	Chr.6: 70232440-70232440 on Build GRCh38

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