Product Details

Primer Sequences

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Primer Chromosome Location

Chr.6: 70234711-70234984 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

COL9A1

Entrez Gene ID

1297

Gene Name

collagen type IX alpha 1

Gene Aliases

DJ149L1.1.2, EDM6, MED, STL4

UniGene

Hs.590892

Gene Chromosome Location

Chr.6: 70216040-70303083 on Build GRCh38

Transcripts

NM_001851.4 NM_078485.3 XM_011535429.2 XM_011535430.2 XM_017010246.1 XM_017010247.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
3777813	c.1431G>A	p.R477R	Chr.6: 70234893-70234893 on Build GRCh38
3629328	c.2205G>A	p.R735R	Chr.6: 70234848-70234848 on Build GRCh38
6373161	c.1499C>T	p.A500V	Chr.6: 70234825-70234825 on Build GRCh38
3394293	c.1474C>T	p.R492W	Chr.6: 70234850-70234850 on Build GRCh38
3629335	c.2152G>A	p.G718R	Chr.6: 70234901-70234901 on Build GRCh38
6107159	c.1396G>C	p.G466R	Chr.6: 70234928-70234928 on Build GRCh38
3629332	c.1459G>A	p.G487R	Chr.6: 70234865-70234865 on Build GRCh38
5720704	c.1462C>T	p.P488S	Chr.6: 70234862-70234862 on Build GRCh38
3875204	c.1529C>T	p.P510L	Chr.6: 70234795-70234795 on Build GRCh38
3161110	c.1465C>T	p.P489S	Chr.6: 70234859-70234859 on Build GRCh38
5871037	c.2201C>T	p.P734L	Chr.6: 70234852-70234852 on Build GRCh38
6107160	c.2128G>T	p.E710*	Chr.6: 70234925-70234925 on Build GRCh38
5871039	c.1472C>T	p.P491L	Chr.6: 70234852-70234852 on Build GRCh38
7292034	c.1419T>C	p.P473P	Chr.6: 70234905-70234905 on Build GRCh38
3830952	c.1501A>C	p.T501P	Chr.6: 70234823-70234823 on Build GRCh38
1754908	c.1407C>T	p.G469G	Chr.6: 70234917-70234917 on Build GRCh38
5499831	c.1470A>T	p.G490G	Chr.6: 70234854-70234854 on Build GRCh38
3629339	c.1415G>A	p.G472E	Chr.6: 70234909-70234909 on Build GRCh38
4356688	c.1465C>T	p.P489S	Chr.6: 70234859-70234859 on Build GRCh38
5871038	c.1472C>T	p.P491L	Chr.6: 70234852-70234852 on Build GRCh38
3830951	c.2230A>C	p.T744P	Chr.6: 70234823-70234823 on Build GRCh38
3629334	c.1438C>T	p.P480S	Chr.6: 70234886-70234886 on Build GRCh38
6107158	c.1396G>C	p.G466R	Chr.6: 70234928-70234928 on Build GRCh38
5590344	c.1424G>A	p.G475E	Chr.6: 70234900-70234900 on Build GRCh38
3629340	c.1415G>A	p.G472E	Chr.6: 70234909-70234909 on Build GRCh38
5499830	c.1470A>T	p.G490G	Chr.6: 70234854-70234854 on Build GRCh38
6373162	c.1499C>T	p.A500V	Chr.6: 70234825-70234825 on Build GRCh38
3161109	c.2194C>T	p.P732S	Chr.6: 70234859-70234859 on Build GRCh38
3394292	c.1474C>T	p.R492W	Chr.6: 70234850-70234850 on Build GRCh38
3875205	c.1529C>T	p.P510L	Chr.6: 70234795-70234795 on Build GRCh38
7292033	c.2148T>C	p.P716P	Chr.6: 70234905-70234905 on Build GRCh38
4161318	c.1388G>T	p.G463V	Chr.6: 70234936-70234936 on Build GRCh38
3394291	c.2203C>T	p.R735W	Chr.6: 70234850-70234850 on Build GRCh38
3830953	c.1501A>C	p.T501P	Chr.6: 70234823-70234823 on Build GRCh38
5982433	c.1503C>T	p.T501T	Chr.6: 70234821-70234821 on Build GRCh38
3629329	c.1476G>A	p.R492R	Chr.6: 70234848-70234848 on Build GRCh38
5982432	c.1503C>T	p.T501T	Chr.6: 70234821-70234821 on Build GRCh38
6373160	c.2228C>T	p.A743V	Chr.6: 70234825-70234825 on Build GRCh38
3629331	c.2188G>A	p.G730R	Chr.6: 70234865-70234865 on Build GRCh38
7292035	c.1419T>C	p.P473P	Chr.6: 70234905-70234905 on Build GRCh38
3629336	c.1423G>A	p.G475R	Chr.6: 70234901-70234901 on Build GRCh38
5982431	c.2232C>T	p.T744T	Chr.6: 70234821-70234821 on Build GRCh38
5499829	c.2199A>T	p.G733G	Chr.6: 70234854-70234854 on Build GRCh38
4900165	c.2182C>T	p.P728S	Chr.6: 70234871-70234871 on Build GRCh38
4900166	c.1453C>T	p.P485S	Chr.6: 70234871-70234871 on Build GRCh38
4535661	c.2216G>A	p.G739E	Chr.6: 70234837-70234837 on Build GRCh38
3777812	c.2160G>A	p.R720R	Chr.6: 70234893-70234893 on Build GRCh38
6107157	c.2125G>C	p.G709R	Chr.6: 70234928-70234928 on Build GRCh38
3161104	c.1486G>A	p.G496R	Chr.6: 70234838-70234838 on Build GRCh38
1754907	c.2136C>T	p.G712G	Chr.6: 70234917-70234917 on Build GRCh38
3629330	c.1476G>A	p.R492R	Chr.6: 70234848-70234848 on Build GRCh38
4161319	c.1388G>T	p.G463V	Chr.6: 70234936-70234936 on Build GRCh38
3161112	c.1438C>T	p.P480S	Chr.6: 70234886-70234886 on Build GRCh38
6107162	c.1399G>T	p.E467*	Chr.6: 70234925-70234925 on Build GRCh38
3629338	c.2144G>A	p.G715E	Chr.6: 70234909-70234909 on Build GRCh38
5720703	c.1462C>T	p.P488S	Chr.6: 70234862-70234862 on Build GRCh38
5590342	c.2153G>A	p.G718E	Chr.6: 70234900-70234900 on Build GRCh38
4356685	c.1486G>A	p.G496R	Chr.6: 70234838-70234838 on Build GRCh38
3777814	c.1431G>A	p.R477R	Chr.6: 70234893-70234893 on Build GRCh38
3875203	c.2258C>T	p.P753L	Chr.6: 70234795-70234795 on Build GRCh38
3629333	c.1459G>A	p.G487R	Chr.6: 70234865-70234865 on Build GRCh38
6107161	c.1399G>T	p.E467*	Chr.6: 70234925-70234925 on Build GRCh38
3629337	c.1423G>A	p.G475R	Chr.6: 70234901-70234901 on Build GRCh38
4535663	c.1487G>A	p.G496E	Chr.6: 70234837-70234837 on Build GRCh38
4161317	c.2117G>T	p.G706V	Chr.6: 70234936-70234936 on Build GRCh38
4535662	c.1487G>A	p.G496E	Chr.6: 70234837-70234837 on Build GRCh38
4900167	c.1453C>T	p.P485S	Chr.6: 70234871-70234871 on Build GRCh38
3161111	c.2167C>T	p.P723S	Chr.6: 70234886-70234886 on Build GRCh38
5720702	c.2191C>T	p.P731S	Chr.6: 70234862-70234862 on Build GRCh38
5590343	c.1424G>A	p.G475E	Chr.6: 70234900-70234900 on Build GRCh38
3161103	c.2215G>A	p.G739R	Chr.6: 70234838-70234838 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs868065305	Chr.6: 70234900-70234900 on Build GRCh38
rs759552165	Chr.6: 70234747-70234747 on Build GRCh38
rs368781924	Chr.6: 70234810-70234810 on Build GRCh38
rs763477632	Chr.6: 70234783-70234783 on Build GRCh38
rs184749864	Chr.6: 70234952-70234952 on Build GRCh38
rs1014687667	Chr.6: 70234833-70234833 on Build GRCh38
rs192467838	Chr.6: 70234894-70234894 on Build GRCh38
rs762955706	Chr.6: 70234939-70234939 on Build GRCh38
rs764717285	Chr.6: 70234926-70234926 on Build GRCh38
rs149459564	Chr.6: 70234813-70234813 on Build GRCh38
rs887513791	Chr.6: 70234805-70234805 on Build GRCh38
rs749881260	Chr.6: 70234935-70234935 on Build GRCh38
rs771273943	Chr.6: 70234890-70234890 on Build GRCh38
rs886061696	Chr.6: 70234914-70234914 on Build GRCh38
rs186821588	Chr.6: 70234826-70234826 on Build GRCh38
rs201479028	Chr.6: 70234812-70234812 on Build GRCh38
rs776778931	Chr.6: 70234747-70234747 on Build GRCh38
rs766190162	Chr.6: 70234949-70234949 on Build GRCh38
rs148695653	Chr.6: 70234850-70234850 on Build GRCh38
rs200418420	Chr.6: 70234753-70234753 on Build GRCh38
rs1029245584	Chr.6: 70234870-70234870 on Build GRCh38
rs1005817817	Chr.6: 70234848-70234848 on Build GRCh38
rs955449925	Chr.6: 70234903-70234903 on Build GRCh38
rs763616322	Chr.6: 70234795-70234795 on Build GRCh38
rs373480203	Chr.6: 70234787-70234787 on Build GRCh38
rs1032780767	Chr.6: 70234921-70234921 on Build GRCh38
rs10945205	Chr.6: 70234739-70234739 on Build GRCh38
rs761379477	Chr.6: 70234922-70234922 on Build GRCh38
rs774807480	Chr.6: 70234891-70234891 on Build GRCh38
rs751249539	Chr.6: 70234821-70234821 on Build GRCh38
rs771313083	Chr.6: 70234786-70234786 on Build GRCh38
rs977443998	Chr.6: 70234907-70234907 on Build GRCh38
rs997685722	Chr.6: 70234854-70234854 on Build GRCh38
rs137958247	Chr.6: 70234804-70234804 on Build GRCh38
rs1049240844	Chr.6: 70234799-70234799 on Build GRCh38
rs781246762	Chr.6: 70234825-70234825 on Build GRCh38
rs748275516	Chr.6: 70234847-70234847 on Build GRCh38
rs894732182	Chr.6: 70234754-70234754 on Build GRCh38
rs765737002	Chr.6: 70234830-70234831 on Build GRCh38
rs143853613	Chr.6: 70234817-70234817 on Build GRCh38
rs769986009	Chr.6: 70234849-70234849 on Build GRCh38
rs760378269	Chr.6: 70234794-70234794 on Build GRCh38
rs867499190	Chr.6: 70234838-70234838 on Build GRCh38
rs953644315	Chr.6: 70234883-70234883 on Build GRCh38
rs750991236	Chr.6: 70234895-70234895 on Build GRCh38
rs769565735	Chr.6: 70234735-70234735 on Build GRCh38
rs988603716	Chr.6: 70234957-70234957 on Build GRCh38
rs753370035	Chr.6: 70234800-70234800 on Build GRCh38
rs936152967	Chr.6: 70234933-70234933 on Build GRCh38
rs776235308	Chr.6: 70234912-70234912 on Build GRCh38
rs12191701	Chr.6: 70234762-70234762 on Build GRCh38

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