Product Details

Primer Sequences

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Primer Chromosome Location

Chr.6: 70239149-70239374 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

COL9A1

Entrez Gene ID

1297

Gene Name

collagen type IX alpha 1

Gene Aliases

DJ149L1.1.2, EDM6, MED, STL4

UniGene

Hs.590892

Gene Chromosome Location

Chr.6: 70216040-70303083 on Build GRCh38

Transcripts

NM_001851.4 NM_078485.3 XM_011535429.2 XM_011535430.2 XM_017010246.1 XM_017010247.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
3629343	c.1354G>A	p.D452N	Chr.6: 70239283-70239283 on Build GRCh38
1487891	c.2087T>A	p.I696K	Chr.6: 70239279-70239279 on Build GRCh38
4586886	c.1377G>A	p.K459K	Chr.6: 70239260-70239260 on Build GRCh38
4586885	c.1377G>A	p.K459K	Chr.6: 70239260-70239260 on Build GRCh38
5678281	c.2102C>A	p.P701Q	Chr.6: 70239264-70239264 on Build GRCh38
5678282	c.1373C>A	p.P458Q	Chr.6: 70239264-70239264 on Build GRCh38
4586884	c.2106G>A	p.K702K	Chr.6: 70239260-70239260 on Build GRCh38
4534645	c.1378G>A	p.G460R	Chr.6: 70239259-70239259 on Build GRCh38
3736424	c.1382C>T	p.S461F	Chr.6: 70239255-70239255 on Build GRCh38
4534646	c.1378G>A	p.G460R	Chr.6: 70239259-70239259 on Build GRCh38
6210148	c.1351-9T>C	p.?	Chr.6: 70239295-70239295 on Build GRCh38
3736423	c.1382C>T	p.S461F	Chr.6: 70239255-70239255 on Build GRCh38
6210146	c.2080-9T>C	p.?	Chr.6: 70239295-70239295 on Build GRCh38
5678283	c.1373C>A	p.P458Q	Chr.6: 70239264-70239264 on Build GRCh38
6210147	c.1351-9T>C	p.?	Chr.6: 70239295-70239295 on Build GRCh38
1487892	c.1358T>A	p.I453K	Chr.6: 70239279-70239279 on Build GRCh38
134139	c.2080G>A	p.G694R	Chr.6: 70239286-70239286 on Build GRCh38
3629342	c.1354G>A	p.D452N	Chr.6: 70239283-70239283 on Build GRCh38
3629341	c.2083G>A	p.D695N	Chr.6: 70239283-70239283 on Build GRCh38
4816091	c.1358T>A	p.I453K	Chr.6: 70239279-70239279 on Build GRCh38
3736422	c.2111C>T	p.S704F	Chr.6: 70239255-70239255 on Build GRCh38
4534644	c.2107G>A	p.G703R	Chr.6: 70239259-70239259 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs762345040	Chr.6: 70239244-70239244 on Build GRCh38
rs776043758	Chr.6: 70239310-70239311 on Build GRCh38
rs57089808	Chr.6: 70239198-70239198 on Build GRCh38
rs747816190	Chr.6: 70239228-70239228 on Build GRCh38
rs746285315	Chr.6: 70239213-70239213 on Build GRCh38
rs1055153910	Chr.6: 70239269-70239269 on Build GRCh38
rs752472702	Chr.6: 70239295-70239295 on Build GRCh38
rs377300717	Chr.6: 70239214-70239214 on Build GRCh38
rs1028433877	Chr.6: 70239237-70239237 on Build GRCh38
rs746347768	Chr.6: 70239320-70239320 on Build GRCh38
rs369671433	Chr.6: 70239337-70239337 on Build GRCh38
rs776327245	Chr.6: 70239221-70239221 on Build GRCh38
rs758886634	Chr.6: 70239331-70239331 on Build GRCh38
rs115948163	Chr.6: 70239185-70239185 on Build GRCh38
rs779266947	Chr.6: 70239212-70239212 on Build GRCh38
rs1031393703	Chr.6: 70239289-70239289 on Build GRCh38
rs769372116	Chr.6: 70239233-70239233 on Build GRCh38
rs999864737	Chr.6: 70239255-70239255 on Build GRCh38
rs767433607	Chr.6: 70239284-70239284 on Build GRCh38
rs759430122	Chr.6: 70239282-70239282 on Build GRCh38
rs750552442	Chr.6: 70239219-70239219 on Build GRCh38
rs774146890	Chr.6: 70239260-70239260 on Build GRCh38
rs754000677	Chr.6: 70239312-70239312 on Build GRCh38
rs9446213	Chr.6: 70239316-70239316 on Build GRCh38
rs772742013	Chr.6: 70239239-70239239 on Build GRCh38
rs764360670	Chr.6: 70239309-70239309 on Build GRCh38
rs780405337	Chr.6: 70239333-70239333 on Build GRCh38
rs756434503	Chr.6: 70239308-70239308 on Build GRCh38
rs766377239	Chr.6: 70239246-70239246 on Build GRCh38
rs779542601	Chr.6: 70239318-70239318 on Build GRCh38
rs901123016	Chr.6: 70239200-70239200 on Build GRCh38

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