Product Details

Primer Sequences

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Primer Chromosome Location

Chr.6: 70216862-70217123 on Build GRCh38 View in UCSC browser

Format

Each primer will be delivered in a single tube, dried-down

Quick Reference Guide

Primer Designer^™ Tool Quick Reference

Ampliseq ID's

Gene Details

Gene Symbol

COL9A1

Entrez Gene ID

1297

Gene Name

collagen type IX alpha 1

Gene Aliases

DJ149L1.1.2, EDM6, MED, STL4

UniGene

Hs.590892

Gene Chromosome Location

Chr.6: 70216040-70303083 on Build GRCh38

Transcripts

NM_001851.4 NM_078485.3 XM_011535429.2 XM_011535430.2 XM_017010246.1 XM_017010247.1

Cosmic Detail

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Cosmic ID	Mutation	AA	Transcript Location
5774968	c.2742A>T	p.A914A	Chr.6: 70216921-70216921 on Build GRCh38
1195521	c.1981G>A	p.A661T	Chr.6: 70216953-70216953 on Build GRCh38
6471369	c.2036G>A	p.*679*	Chr.6: 70216898-70216898 on Build GRCh38
4483355	c.2694C>T	p.P898P	Chr.6: 70216969-70216969 on Build GRCh38
3629316	c.2630G>A	p.R877Q	Chr.6: 70217033-70217033 on Build GRCh38
3629314	c.1922G>A	p.G641E	Chr.6: 70217012-70217012 on Build GRCh38
5657234	c.1869C>A	p.A623A	Chr.6: 70217065-70217065 on Build GRCh38
7362345	c.2728G>T	p.A910S	Chr.6: 70216935-70216935 on Build GRCh38
4908528	c.1955C>A	p.P652H	Chr.6: 70216979-70216979 on Build GRCh38
4908527	c.2684C>A	p.P895H	Chr.6: 70216979-70216979 on Build GRCh38
1697507	c.2683C>T	p.P895S	Chr.6: 70216980-70216980 on Build GRCh38
4153596	c.2028T>A	p.P676P	Chr.6: 70216906-70216906 on Build GRCh38
6894917	c.2623G>T	p.G875C	Chr.6: 70217040-70217040 on Build GRCh38
5774970	c.2013A>T	p.A671A	Chr.6: 70216921-70216921 on Build GRCh38
3662689	c.1944C>A	p.P648P	Chr.6: 70216990-70216990 on Build GRCh38
6471368	c.2765G>A	p.*922*	Chr.6: 70216898-70216898 on Build GRCh38
7362350	c.1998G>C	p.Q666H	Chr.6: 70216936-70216936 on Build GRCh38
6107165	c.1866T>A	p.P622P	Chr.6: 70217068-70217068 on Build GRCh38
5807324	c.2592C>T	p.G864G	Chr.6: 70217071-70217071 on Build GRCh38
3629315	c.1922G>A	p.G641E	Chr.6: 70217012-70217012 on Build GRCh38
5584889	c.2675C>T	p.P892L	Chr.6: 70216988-70216988 on Build GRCh38
317167	c.2598C>A	p.A866A	Chr.6: 70217065-70217065 on Build GRCh38
5807326	c.1863C>T	p.G621G	Chr.6: 70217071-70217071 on Build GRCh38
1081225	c.2677G>T	p.G893*	Chr.6: 70216986-70216986 on Build GRCh38
4483441	c.1971C>T	p.F657F	Chr.6: 70216963-70216963 on Build GRCh38
4483440	c.1971C>T	p.F657F	Chr.6: 70216963-70216963 on Build GRCh38
5613015	c.2005C>A	p.Q669K	Chr.6: 70216929-70216929 on Build GRCh38
743258	c.2668G>C	p.G890R	Chr.6: 70216995-70216995 on Build GRCh38
1596496	c.1948G>T	p.G650*	Chr.6: 70216986-70216986 on Build GRCh38
338366	c.2723T>A	p.M908K	Chr.6: 70216940-70216940 on Build GRCh38
5774969	c.2013A>T	p.A671A	Chr.6: 70216921-70216921 on Build GRCh38
4356672	c.1981G>A	p.A661T	Chr.6: 70216953-70216953 on Build GRCh38
4153594	c.2757T>A	p.P919P	Chr.6: 70216906-70216906 on Build GRCh38
5807325	c.1863C>T	p.G621G	Chr.6: 70217071-70217071 on Build GRCh38
4862921	c.1939G>C	p.G647R	Chr.6: 70216995-70216995 on Build GRCh38
7362349	c.1998G>C	p.Q666H	Chr.6: 70216936-70216936 on Build GRCh38
6107164	c.1866T>A	p.P622P	Chr.6: 70217068-70217068 on Build GRCh38
4908529	c.1955C>A	p.P652H	Chr.6: 70216979-70216979 on Build GRCh38
6471370	c.2036G>A	p.*679*	Chr.6: 70216898-70216898 on Build GRCh38
3629310	c.2656C>T	p.P886S	Chr.6: 70217007-70217007 on Build GRCh38
3830949	c.2009G>A	p.R670Q	Chr.6: 70216925-70216925 on Build GRCh38
5657531	c.1975G>A	p.E659K	Chr.6: 70216959-70216959 on Build GRCh38
4757095	c.2611A>C	p.N871H	Chr.6: 70217052-70217052 on Build GRCh38
1621883	c.2673C>A	p.P891P	Chr.6: 70216990-70216990 on Build GRCh38
1150467	c.1939G>C	p.G647R	Chr.6: 70216995-70216995 on Build GRCh38
6633829	c.2622C>T	p.D874D	Chr.6: 70217041-70217041 on Build GRCh38
5584890	c.1946C>T	p.P649L	Chr.6: 70216988-70216988 on Build GRCh38
7362348	c.2727G>C	p.Q909H	Chr.6: 70216936-70216936 on Build GRCh38
3629313	c.2651G>A	p.G884E	Chr.6: 70217012-70217012 on Build GRCh38
3629317	c.1901G>A	p.R634Q	Chr.6: 70217033-70217033 on Build GRCh38
6305376	c.2026C>A	p.P676T	Chr.6: 70216908-70216908 on Build GRCh38
5657530	c.1975G>A	p.E659K	Chr.6: 70216959-70216959 on Build GRCh38
1195520	c.2710G>A	p.A904T	Chr.6: 70216953-70216953 on Build GRCh38
4483439	c.2700C>T	p.F900F	Chr.6: 70216963-70216963 on Build GRCh38
1697508	c.1954C>T	p.P652S	Chr.6: 70216980-70216980 on Build GRCh38
6305375	c.2755C>A	p.P919T	Chr.6: 70216908-70216908 on Build GRCh38
6894918	c.1894G>T	p.G632C	Chr.6: 70217040-70217040 on Build GRCh38
1081226	c.2660G>T	p.G887V	Chr.6: 70217003-70217003 on Build GRCh38
6107163	c.2595T>A	p.P865P	Chr.6: 70217068-70217068 on Build GRCh38
7362347	c.1999G>T	p.A667S	Chr.6: 70216935-70216935 on Build GRCh38
4483356	c.1965C>T	p.P655P	Chr.6: 70216969-70216969 on Build GRCh38
3629312	c.1927C>T	p.P643S	Chr.6: 70217007-70217007 on Build GRCh38
3830948	c.2009G>A	p.R670Q	Chr.6: 70216925-70216925 on Build GRCh38
6107168	c.1997A>C	p.Q666P	Chr.6: 70216937-70216937 on Build GRCh38
4483357	c.1965C>T	p.P655P	Chr.6: 70216969-70216969 on Build GRCh38
3629318	c.1901G>A	p.R634Q	Chr.6: 70217033-70217033 on Build GRCh38
317168	c.2704G>A	p.E902K	Chr.6: 70216959-70216959 on Build GRCh38
3161080	c.1900C>T	p.R634*	Chr.6: 70217034-70217034 on Build GRCh38
4864793	c.1931G>T	p.G644V	Chr.6: 70217003-70217003 on Build GRCh38
5657235	c.1869C>A	p.A623A	Chr.6: 70217065-70217065 on Build GRCh38
1596495	c.1931G>T	p.G644V	Chr.6: 70217003-70217003 on Build GRCh38
3830947	c.2738G>A	p.R913Q	Chr.6: 70216925-70216925 on Build GRCh38
5613013	c.2734C>A	p.Q912K	Chr.6: 70216929-70216929 on Build GRCh38
319633	c.2731G>T	p.G911C	Chr.6: 70216932-70216932 on Build GRCh38
6107166	c.2726A>C	p.Q909P	Chr.6: 70216937-70216937 on Build GRCh38
6633831	c.1893C>T	p.D631D	Chr.6: 70217041-70217041 on Build GRCh38
7362346	c.1999G>T	p.A667S	Chr.6: 70216935-70216935 on Build GRCh38
5584891	c.1946C>T	p.P649L	Chr.6: 70216988-70216988 on Build GRCh38
4356673	c.1900C>T	p.R634*	Chr.6: 70217034-70217034 on Build GRCh38
6107167	c.1997A>C	p.Q666P	Chr.6: 70216937-70216937 on Build GRCh38
5613014	c.2005C>A	p.Q669K	Chr.6: 70216929-70216929 on Build GRCh38
4153595	c.2028T>A	p.P676P	Chr.6: 70216906-70216906 on Build GRCh38
4757097	c.1882A>C	p.N628H	Chr.6: 70217052-70217052 on Build GRCh38
4757096	c.1882A>C	p.N628H	Chr.6: 70217052-70217052 on Build GRCh38
3629311	c.1927C>T	p.P643S	Chr.6: 70217007-70217007 on Build GRCh38
4871169	c.1948G>T	p.G650*	Chr.6: 70216986-70216986 on Build GRCh38
3161079	c.2629C>T	p.R877*	Chr.6: 70217034-70217034 on Build GRCh38
6305377	c.2026C>A	p.P676T	Chr.6: 70216908-70216908 on Build GRCh38
1621884	c.1944C>A	p.P648P	Chr.6: 70216990-70216990 on Build GRCh38
6633830	c.1893C>T	p.D631D	Chr.6: 70217041-70217041 on Build GRCh38
6894919	c.1894G>T	p.G632C	Chr.6: 70217040-70217040 on Build GRCh38

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SNP Detail

SNP ID	Chromosome Location
rs969476871	Chr.6: 70217076-70217076 on Build GRCh38
rs767536535	Chr.6: 70216986-70216986 on Build GRCh38
rs760617713	Chr.6: 70216988-70216988 on Build GRCh38
rs745421286	Chr.6: 70217073-70217073 on Build GRCh38
rs567606245	Chr.6: 70216942-70216942 on Build GRCh38
rs374561398	Chr.6: 70216902-70216902 on Build GRCh38
rs199581593	Chr.6: 70217040-70217040 on Build GRCh38
rs1056921	Chr.6: 70217054-70217054 on Build GRCh38
rs1031413732	Chr.6: 70217020-70217020 on Build GRCh38
rs747451078	Chr.6: 70216935-70216935 on Build GRCh38
rs772906014	Chr.6: 70216938-70216938 on Build GRCh38
rs149139869	Chr.6: 70217041-70217041 on Build GRCh38
rs981306729	Chr.6: 70217077-70217077 on Build GRCh38
rs145221543	Chr.6: 70216926-70216926 on Build GRCh38
rs376876121	Chr.6: 70216936-70216936 on Build GRCh38
rs758388716	Chr.6: 70217034-70217034 on Build GRCh38
rs202176764	Chr.6: 70217078-70217078 on Build GRCh38
rs898990280	Chr.6: 70216912-70216912 on Build GRCh38
rs770502831	Chr.6: 70216968-70216968 on Build GRCh38
rs763970167	Chr.6: 70216992-70216992 on Build GRCh38
rs370064762	Chr.6: 70216910-70216910 on Build GRCh38
rs370324739	Chr.6: 70216969-70216969 on Build GRCh38
rs764914222	Chr.6: 70216956-70216956 on Build GRCh38
rs957580783	Chr.6: 70216985-70216985 on Build GRCh38
rs201520437	Chr.6: 70217045-70217045 on Build GRCh38
rs773848465	Chr.6: 70217050-70217050 on Build GRCh38
rs879430201	Chr.6: 70216925-70216925 on Build GRCh38
rs773034538	Chr.6: 70217087-70217088 on Build GRCh38
rs1056920	Chr.6: 70217056-70217056 on Build GRCh38
rs764060012	Chr.6: 70217096-70217096 on Build GRCh38
rs775559838	Chr.6: 70217083-70217083 on Build GRCh38
rs778177942	Chr.6: 70216885-70216885 on Build GRCh38
rs745872166	Chr.6: 70216922-70216922 on Build GRCh38
rs758916884	Chr.6: 70216979-70216979 on Build GRCh38
rs569046385	Chr.6: 70217075-70217075 on Build GRCh38
rs886138293	Chr.6: 70216901-70216901 on Build GRCh38
rs1056923	Chr.6: 70217019-70217019 on Build GRCh38
rs1028844209	Chr.6: 70216952-70216952 on Build GRCh38
rs200829297	Chr.6: 70217046-70217046 on Build GRCh38
rs773938837	Chr.6: 70216974-70216974 on Build GRCh38
rs757561926	Chr.6: 70216994-70216994 on Build GRCh38
rs750538159	Chr.6: 70217026-70217026 on Build GRCh38
rs373430094	Chr.6: 70216909-70216909 on Build GRCh38
rs760704462	Chr.6: 70217084-70217084 on Build GRCh38
rs199845159	Chr.6: 70216987-70216987 on Build GRCh38

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