Infertility touches the lives of many couples. An estimated 48.5 million couples worldwide suffer from infertility (1), spurring the usage of assisted reproductive technologies around the globe. Preimplantation genetic screening is a type of assisted reproductive technology. Fertility researchers are investigating new technologies such as next-generation sequencing for preimplantation genetic screening.

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What is preimplantation genetic screening?

Preimplantation genetic screening (PGS), also known as preimplantation genetic testing – aneuploidy (PGT-A), is a genetic test that determines whether an embryo biopsy has the correct number of chromosomes and which chromosomes are present. Aneuploidy is the term used if there are too many or too few chromosomes. PGS detects aneuploidy and is a growing area of interest in fertility research.  And it is more commonly incorporated into IVF workflows to decrease miscarriage rates and shorten the time to pregnancy (2).

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Start PGS with Ion ReproSeq PGS kits

Designed to get fast results from precious embryo biopsy samples, Ion Torrent next-generation sequencing (NGS) provides a simple PGS workflow with flexible sample throughput for reliable and rapid aneuploidy detection with Ion ReproSeq PGS kits in less than 10 hours*. These kits take advantage of automated template preparation using the Ion Chef System and can be used to analyze 16–96 samples.

Learn about PGS from key opinion leaders in the field

Detection of aneuploidy in a single cell using the Ion ReproSeq PGS Kit

Driving toward 100% success rate – preimplantation genetic screening

Dr. Colin Lee
Founder and Medical Director
Alpha International Fertility Centre

Ion ReproSeq PGS Kit

Simplified preimplantation genetic testing workflow on a single embryo biopsy

Luis Alcaraz, PhD
Co-founder, Scientific and Laboratory Director


Ion GeneStudio S5 and Ion GeneStudio S5 Plus NGS systems

Adopting NGS in your lab is now simpler than ever. The Ion GeneStudio S5 and Ion GeneStudio S5 Plus Systems enable the simplest targeted sequencing workflow for your lab with industry-leading speed and affordability.

Request a quote for an Ion GeneStudio S5 System ›

Video: Understand the Ion ReproSeq workflow

Preimplantation genetic screening made simple. Improve your PGS with reliable and rapid aneuploidy detection with ReproSeq PGS kits.

The workflow below illustrates a simple and rapid workflow from a single cell to aneuploidy detection. The Ion ReproSeq PGS kits include all materials for library construction, template preparation, and sequencing in the Ion GeneStudio S5 System workflow taking you from cell to analysis in less than 10 hours*.

Ion ReproSeq PGS Kit for Preimplantation Genetic Screening

The Ion sequencing chips—the Ion 510 Chip, Ion 520 Chip, and Ion 530 Chip—provide sample throughput flexibility and scalability to match your needs and enable cost-effective analysis of 16, 24, or 96 samples in a single sequencing run.

Turnaround time for the Ion ReproSeq PGS Kits using Ion 510 Chip, Ion 520 Chip, or Ion 530 Chip
Figure 1. Rapid total turnaround time for complete aneuploidy analysis using the Ion ReproSeq PGS kits. The comparison table shows less than 10 hours of total time for the Ion 510 chips (16 samples/run), 10 hours for the Ion 520 chips (24 samples/run), and 13 hours for the Ion 530 chips (96 samples/run). Hands-on time is noted as the light blue bar.

Leveraging the speed of Ion Torrent NGS, the Ion ReproSeq PGS kits enable detection of whole-chromosome, mosaic, and small copy number events from just six pg of DNA from single or multiple cells.

The simple cartridge-loaded reagents and straightforward user interface of the Ion GeneStudio S5 System, along with automated template preparation on the Ion Chef System, minimize user errors and facilitate rapid implementation of PGS research in your lab.]

The Ion ReproSeq PGS kits offer:

  • Sample throughput flexibility—three kit configurations enable analysis of 16, 24, or 96 samples in a single run on a single platform
  • Rapid NGS workflow for aneuploidy analysis—cells to results in less than 10 hours*
  • Simple, end-to-end workflow—reduce hands-on time to less than 2 hours* and minimize user error
  • Enhanced interpretation of results with Ion Reporter Software—mosaicism detection, gender masking, and improved data plotting (for easier data interpretation)
Figure 2. Aneuploidy detection from a single cell using the Ion ReproSeq PGS kits. Data shown in the top panel illustrate a deviation (in blue) from baseline, indicating 45 Mbp duplication of chromosome 9 (male). Data shown on bottom panel indicate a deletion (in red) of 48 Mbp on chromosome 13 (female).

Torrent Suite Software coordinates all the experiment planning and data processing steps necessary to complete your targeted sequencing workflow. Its intuitive, web-based interface through the Torrent Browser enables users to plan, monitor, and view sequencing run results quickly and simply. Data generated on an Ion GeneStudio S5 System are transferred to the Ion S5 Torrent Server for base calling and automatically uploaded to Ion Reporter Software for further analysis.

The aneuploidy analysis workflow in Ion Reporter Software makes analyzing and reporting aneuploidy results simple and fast. This low-pass coverage analysis workflow processes samples by comparing them to a built-in bioinformatics control baseline to deliver the DNA ploidy status of each sample. Users can visualize aneuploidy profiles using the customized IGV Karyotype View and create their own interpretive report.

Results obtained from Ion ReproSeq PGS kits run on either an Ion GeneStudio S5 System or the Ion PGM System benefit from new functionalities such as mosaicism detection, gender masking, and improved analysis time using Ion Reporter Software v5.4 or higher.

Access the free web-based Ion Reporter Software ›

Ion ReproSeq PGS Kit

Fastest benchtop sequencing solution
for reliable aneuploidy screening

1 Extract DNA and
Construct Library
Ion Torrent™ library kits

Isolate and amplify DNA from a Day 3 or Day 5 embryo biopsy

Construct fragment library to prepare samples for sequencing


  • Ion ReproSeq PGS Kit
  • 2 Prepare
    Ion Chef™ System

    Prepare template using rapid isothermal amplification technology for a sequencing run on the Ion PGM System


  • Ion ReproSeq PGS Kit
  • Ion OneTouch ES
  • 3 Run
    Proton System

    Load template on the chip and start sequencing run on the Ion PGM Instrument


  • Ion ReproSeq PGS Kit
  • Ion PGM System
  • 4 Analyze
    Ion Reporter Software

    Perform aneuploidy analysis


  • Torrent Suite Software
  • Ion Reporter Software
  • Ion ReproSeq PGS Kit bundle, when used in conjunction with the Ion PGM System and the Ion OneTouch ES, provide all reagents and materials required to perform whole genome amplification and sequencing starting from a single cell. DNA is isolated from a Day 3 or Day 5 embryo, amplified, and barcoded using the Ion SingleSeq™ Kit, in under 3.5 hours. Following library construction, the template is prepared using the Ion PGM™ Template IA 500 Kit in a fast isothermal reaction and enriched using the Ion OneTouch™ ES, in just 2 hours. After the prepared templates are loaded onto a chip, sequencing is carried out and completed on the Ion PGM System in just 2.5 hours for the Ion 314 Chip v2 or 4.5 hours for the Ion 318 Chip v2. The resulting data are automatically transferred to Torrent Suite Software for primary data analysis, and aneuploidy status is determined using the Ion Reporter Software Aneuploidy Analysis workflow.

    Download Ion ReproSeq PGS Kit Flyer


    1. Mascarenhas MN, Flaxman SR, Boerma T, Vanderpoel S, Stevens GA. National, regional, and global trends in infertility prevalence since 1990: a systematic analysis of 277 health surveys. PLoS Med. 2012;9(12):e1001356.
    2. Rubio C, Bellver J, Rodrigo L, Castillón G, Guillén A, Vidal C, Giles J, Ferrando M, Cabanillas S, Remohí J, Pellicer A, Simón C. In vitro fertilization with preimplantation genetic diagnosis for aneuploidies in advanced maternal age: a randomized, controlled study. Fertil Steril. 2017 May;107(5):1122-1129.

    *Turnaround time for the Ion ReproSeq PGS Kit with Ion 510 Chips (16 samples/run) is less than 10 hours with less than 2 hours of hands on time