Shop All Cancer Biomarker Characterization & Data Analysis

Oncomine™ Gene Browser, Academic License

Oncomine™ Gene Browser, Academic, is a web-based software tool for academic researchers that provides easy access to a comprehensive gene profile across thousands of cancer patient genomes. The rich dataset is presented in a visual and dynamic environment that easily conveys significant gene mutations, expression, and DNA copy number changes. It also enables customers to quickly and easily ask questions across hundreds of cancer subtypes for any gene. Designed for a broad audience, the Oncomine™ Gene Browser is fast, easy to use, and provides powerful insight into any gene target by deriving knowledge from the world’s oncology experiments.

• Profile your critical targets and biomarkers across tens of thousands of retrospective de-identified patient tumor genomes online, in minutes
• Rapidly prioritize targets based on mutations, copy number variants, and differential expression
• Identify optimal patient segments for your clinical development based on biomarker frequencies in well-characterized patient populations

Benefits
A key benefit of Oncomine™ Gene Browser is the fast and comprehensive evaluation of your oncology gene targets within the world's oncology experimental data. No longer relying on one or two research publications for validation or being restricted to author interpretation and focus, an unbiased approach to evaluating your gene targets can be performed in minutes, often yielding insights into new cancer subtypes that can expand your target clinical population.

Oncomine™ Gene Browser empowers users to assess mutations, gene expression, DNA copy number, cancer subtypes, normal tissue expression, and pick cell line models. In a nutshell, millions of dollars worth of experiments are at your fingertips and can be "performed" in silico so that you can design and execute fewer, more focused wet lab experiments on the targets and indications that have a greater chance for success.

Learn more about Oncomine™ Gene Browser.

Oncomine™ Gene Browser, Academic, can be licensed for various user numbers, up to an institutional license with an unlimited number of registered users.

Note: This product is for academic and nonprofit cancer researchers only. If you are a commercial/for-profit cancer researcher, please contact one of our knowledgable sales specialists at compendiasales@lifetech.com.

How to Order
Order this product as you would any standard product. You will receive an email with your user name and temporary password, which you can then use to log in and get started.

Oncomine™ Concepts Edition, Biotech License

Oncomine™ Concepts Edition is a powerful web application for biotech and pharma scientists that integrates and unifies high-throughput cancer profiling data so that target expression across a large volume of cancer types, subtypes, and experiments can be assessed online, in seconds. Oncomine™ Concepts Edition is a hypothesis-neutral, data driven solution developed to leverage datasets from global sources and consists of the most comprehensive collection of oncology focused and curated datasets.

Oncomine™ Concepts Edition is complete with analysis and visualization methods designed to help scientists address the most relevant drug discovery and biomarker discovery questions. It includes thousands of pre-computed analyses for differential expression, co-expression, outlier analysis, as well as meta-analyses to compare independent results on differential expression and outliers. Additionally, it allows users to search the Oncomine™ database for enrichment of user-defined gene signatures. These analyses provide valuable insight into biology, regulation, pathways, drug response, and patient populations. Overall, Oncomine™ Concepts Edition provides a simple yet powerful way to support target discovery, validation, and the prioritization of tumor populations for drug development.

Learn more about Oncomine™ Concepts Edition.

Oncomine™ Concepts Edition can be licensed annually for 10 users or for a global, unlimited number of users. Oncomine™ Concepts Edition requires the Oncomine™ Data Bundle #1 license.

Oncomine™ Gene Browser, Biotech License

The Oncomine™ Gene Browser, Biotech, is a web-based software tool for biotech and pharma scientists that provides easy access to a comprehensive gene profile across thousands of cancer patient genomes. The rich dataset is presented in a visual and dynamic environment that easily conveys significant gene mutations, expression, and DNA copy number changes. It also enables customers to quickly and easily ask questions across hundreds of cancer subtypes for any gene. Designed for a broad audience, the Oncomine™ Gene Browser is fast, easy to use, and provides powerful insight into any gene target by deriving knowledge from the world’s oncology experiments.

• Profile your critical targets and biomarkers across tens of thousands of retrospective de-identified patient tumor genomes online, in minutes
• Rapidly prioritize targets based on mutations, copy number variants, and differential expression
• Identify optimal patient segments for your clinical development based on biomarker frequencies in well-characterized patient populations

Benefits
A key benefit of Oncomine™ Gene Browser is the fast and comprehensive evaluation of your oncology gene targets within the world's oncology experimental data. No longer relying on one or two research publications for validation or being restricted to author interpretation and focus, an unbiased approach to evaluating your gene targets can be performed in minutes, often yielding insights into new cancer subtypes that can expand your target clinical population.

Oncomine™ Gene Browser empowers users to assess mutations, gene expression, DNA copy number, cancer subtypes, normal tissue expression, and pick cell line models. In a nutshell, millions of dollars worth of experiments are at your fingertips and can be "performed" in silico so that you can design and execute fewer, more focused wet lab experiments on the targets and indications that have a greater chance for success.

Learn more about Oncomine™ Gene Browser.

Oncomine™ Gene Browser, Biotech, licenses are available for different monthly terms. Oncomine™ Gene Browser is also available as part of the Oncomine™ Power Tools.

Oncomine™ Research Premium Edition License

Oncomine™ Research Premium Edition is a subscription-based software tool for academic researchers that provides additional advanced features and analyses over Oncomine™ Research Edition (a free edition available at www.oncomine.org). Oncomine™ Research Edition is a powerful web application that integrates and unifies high-throughput cancer profiling data so that target expression across a large number of cancer types and experiments can be accessed online, in seconds. Oncomine™ Research Edition includes basic analysis types such as cancer vs. normal, multi-cancer, and co-expression. It features gene and concept summaries, outlier analysis, meta-analysis, and meta-cancer outlier profile analysis (COPA). In addition, Oncomine™ Research Edition has an Oncomine™ support community site where users can share their experiences using this software tool.

Oncomine™ Research Premium Edition is a subscription version that allows users with advanced research needs to take advantage of additional features and analyses. These features include both basic and advanced analyses such as cancer subtype, clinical outcome, patient treatment response, perturbation analyses, and drug sensitivity analyses. These analyses provide valuable insight into biology, regulation, pathways, drug response, and patient populations. In addition, the Premium Edition allows users to search for multiple genes at a time, export to Excel, PowerPoint, and SVG to share results, upload custom concepts, and access enhanced support, as well as search the Oncomine™ database for enrichment of user-defined gene signatures.

Oncomine™ Research Premium Edition features:

• Advanced search features, including multi-gene searching, allow you to visualize your data faster and easier
• My Concepts is a custom concept upload that makes your workflows more efficient by allowing you to quickly run an analysis on your specific signature
• Export results to Excel, PowerPoint, and SVG to perform additional analyses and easily share your findings; export nodes and edges files for concept association visualizations
• Sophisticated built-in analyses allow you to answer critical research questions about your data

Learn more about Oncomine™ Research Premium Edition.

Oncomine™ Research Premium Edition can be licensed for various user numbers, up to an institutional license with unlimited number of registered users. You must be a registered user of Oncomine™ Research Edition to upgrade.

Note: This product is for academic and nonprofit cancer researchers only. If you are a commercial/for-profit cancer researcher, please contact one of our knowledgable sales specialists at compendiasales@lifetech.com.

How to Order
If you are not already a registered user of the free version of the software, please visit www.oncomine.org to register for Oncomine™ Research Edition. You will receive an email with your user name and temporary password, which you can then use to log in a get started using the free edition. Once this is done, or if you are already a registered use of the free edition, simply order this product as you would any standard product. Within 1 business day your account will be upgraded to the Premium edition and you will see the added features of the Premium edition the next time you log in.

Oncomine™ Power Tools, Biotech License

Oncomine™ Power Tools provide a highly interactive and visual environment for biotech and pharma scientists to interrogate data and conduct analyses to address key questions in oncology research. Designed for computational to bench-level biologists, these tools present both detailed results and dynamic summaries of the world’s genomic oncology experiments. Power Tools are built on the Oncomine™ platform and utilize the latest data and analyses. The tools are designed to address questions in drug R&D and currently consist of the following:

DNA Copy Number Browser for identifying focal amplifications and distinguishing driver from passenger amplifications/deletions across multiple clinical datasets.
Gene Expression Browser for identifying and confirming differential expression in multiple cancer types across multiple independent datasets.
Mutation Browser for exploring frequency of mutation for a specific gene or identifying the most prevalent mutation in a cancer type.
Oncomine™ Gene Browser for identifying significant genetic alterations across all cancer types in a single snapshot view with the capability of drilling down to the sample level.

Oncomine™ Power Tools can help address questions like these:

• Which gene is most frequently mutated in glioblastomas and which amino acid changes are recurrent that are predictive of a potential oncogene?
• What novel mutations exist in the latest exon-wide, high-throughput sequencing experiments?
• What focal amplifications are present in 2–3% of lung cancer clinical samples and what cell lines possess similar amplifications to use as models?
• What novel amplifications can be identified in the latest high resolution Agilent experiments from TCGA and Broad Tumorscape data?
• What cancer types show the highest level of expression of my target gene in clinical research samples and cell lines?

Learn more about Oncomine™ Power Tools.

Oncomine™ Power Tools can be licensed annually for 10 users or for a global, unlimited number of users. Oncomine™ Power Tools require the Oncomine™ Data Bundle #1 license.

Oncomine™ NGS Power Tools, Biotech License

Oncomine™ NGS Power Tools is a suite of web-based applications that deliver to biotech and pharma scientists the latest data derived from large Next-Generation Sequencing (NGS) oncology experiments from The Cancer Genome Atlas (TCGA) project and other high impact publications. The datasets are curated and analyzed by Compendia Bioscience proprietary pipelines. This suite includes three distinct tools that provide specific and high confidence actionable mutations, gene fusions, and integrated analyses of multiple results sets across multiple patients. Users can browse results to identify novel genomic aberrations and supporting evidence to pursue the most promising cancer drug targets.

Learn more about Oncomine™ NGS Power Tools.

Oncomine™ NGS Power Tools can be licensed annually for 10 users or for a global, unlimited number of users. Oncomine™ NGS Power Tools require the Oncomine™ Data Bundle #2 license.