Plasmid libraries may be amplified using several different methods. Growth in liquid culture will frequently result in skewed representation of clones due to differential growth characteristics of individual clones. To minimize these representational biases, we recommend semi-solid amplification. With this method, colonies are grown in 2X LB broth and 0.3% agarose in suspension, facilitating equal growth of all clones and avoiding disproportionate amplification.
Alternatively, amplification of plasmid libraries may be done on selective agar plates, as described below. Libraries containing expression vector plasmids such as pSPORT or pCMV SPORT should be grown under noninduced conditions (no lactose, no IPTG). The lac repressor gene encoded on the pSPORT plasmid is sufficient to prevent expression of the recombinant genes cloned into the multiple cloning site. Repression of expression is necessary to ensure the amplification of clones whose gene products may be harmful to survival of the E. coli host.
Recommended protocol for Library Amplification on Plates:
1. After titering the original library, plate the cells at a density of ~1 x 10E4 CFU per 100 mm plate or ~0.5 x 10E5 CFU per 150 mm plate. Use selective media containing the appropriate antibiotic.
2. Grow at 37°C until a thick lawn is visible (~6 to 12 h).
3. Add 5 ml per 100 mm plate or 15 ml per 150 mm plate of S.O.C. medium or LB broth.
4. Gently coax the bacterial lawn into the broth with a cell scraper (or a glass slide).
5. Collect the suspension and repeat steps 3 and 4 once more. Pool the broths, then incubate at 37°C for no longer than 1 h with constant swirling.
6a. If the bacterial suspension is highly dense, add glycerol to a concentration of 15% to 50%; aliquot the cells into cryovials; and immediately store them at -70°C.
6b. If the bacterial solution is too dilute, centrifuge at 7,000 x g for 10 min and resuspend in a smaller volume of 15% to 50% glycerol/media and freeze.
7. For use, thaw the cryovials and plate dilutions onto selective media.
NOTE:
-The viability of E. coli stored at -70°C will not change substantially for years, unless thawed and refrozen.
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