Slice by Slice Thinning
Add-on

Slice by Slice Thinning

XPand module

6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice.  Learn more

How to Set the Colormap for Ortho Slice and Volume Rendering
How-to

How to Set the Colormap for Ortho Slice and Volume Rendering

Demo

18 Nov 2021 - This tutorial is an introduction to the basic principle and use of colormaps.  Learn more

How to Create a Particles Segmentation Recipe in Avizo2D Software
How-to

How to Create a Particles Segmentation Recipe in Avizo2D Software

Demo

18 Nov 2021 - This tutorial demonstrates how to use the Image Recipe Designer (formerly 'ISP') workroom in Avizo2D software to create and run a recipe for particles segmentation.  Learn more

FIBSEM Mitochondria Segmentation
Add-on How-to

FIBSEM Mitochondria Segmentation

Deep learning model

12 Jan 2021 - Pre-trained model for the Deep Learning Prediction module detecting mitochondria in a Focused Ion Beam Scanning Electron Microscope (FIBSEM) data set.  Learn more

Relative Area Fraction for Amira-Avizo2D
Add-on How-to

Relative Area Fraction for Amira-Avizo2D

Recipe ISP, IVP, A2D, Python (pyscro), Data, Misc

5 Oct 2020 - This Xtra provides a module to help compute the area fraction of a label over the area of another label in Amira-Avizo2D.  Learn more

AMIRA_LOCAL Setup Tutorial
How-to

AMIRA_LOCAL Setup Tutorial

Demo

5 Oct 2020 - This Xtra provides a brief video that explains how to set up an AMIRA_LOCAL path on Windows 10.  Learn more

Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D
Add-on

Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D

Recipe ISP, IVP, A2D

3 Jul 2020 - This is a workflow to segment out osteocytes in mouse bone sample using Amira-Avizo2D.  Learn more

How to Use Deep Learning Models in Amira-Avizo2D Analyzer
Add-on

How to Use Deep Learning Models in Amira-Avizo2D Analyzer

Recipe ISP, IVP, A2D, Deep learning model, Data

3 Oct 2019 - Examples showing how to use AI (deep learning models) in an Analyzer recipe (hxisp).  Learn more

Getting Started with Deep Learning Training for Image Segmentation
Add-on

Getting Started with Deep Learning Training for Image Segmentation

Deep learning model, Project (hx, pgo), Data

27 Jun 2019 - Model and companion project for the Deep Learning tutorial.  Learn more

BSE SEM Denoiser
Add-on

BSE SEM Denoiser

Deep learning model

21 Jun 2019 - U-Net model for denoising back-scattered SEM images.  Learn more