# Amira Project 202030
# Amira
# Generated by Amira 2020.3-beta-4
remove -all
remove "physics.icol.am" "grayScale.am" "labels.am" "labels256.am" "00000000.tif.am" "00000000.tif.filtered" "00000000.tif2.filtered" "00000000.tif2.GraphBasedSegmentationsegmap" "00000000.tif3.filtered" "00000000.tif4.filtered" "Median Filter" "Non-Local Means Filter" "Ortho Slice" "GraphBasedSegmentation" "Filter by Measure Range" "Filter by Measure Range 2" "Color Wash" "Ortho Slice 2"

# Create viewers
viewer setVertical 1

viewer 0 setTransparencyType 7
viewer 0 setAutoRedraw 0
viewer 0 show
viewer 1 setTransparencyType 7
viewer 1 setAutoRedraw 0
viewer 1 show
mainWindow show

_units setUnitsManagementMode 0

set hideNewModules 1
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/physics.icol.am ] setLabel "physics.icol.am"
"physics.icol.am" setIconPosition 0 0
"physics.icol.am" setNoRemoveAll 1
"physics.icol.am" fire
"physics.icol.am" setMinMax 0 1
"physics.icol.am" flags setValue 1
"physics.icol.am" shift setMinMax -1 1
"physics.icol.am" shift setButtons 0
"physics.icol.am" shift setEditButton 1
"physics.icol.am" shift setIncrement 0.133333
"physics.icol.am" shift setValue 0
"physics.icol.am" shift setSubMinMax -1 1
"physics.icol.am" scale setMinMax 0 1
"physics.icol.am" scale setButtons 0
"physics.icol.am" scale setEditButton 1
"physics.icol.am" scale setIncrement 0.1
"physics.icol.am" scale setValue 1
"physics.icol.am" scale setSubMinMax 0 1
"physics.icol.am" fire
"physics.icol.am" setViewerMask 16383

set hideNewModules 1
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/grayScale.am ] setLabel "grayScale.am"
"grayScale.am" setIconPosition 0 0
"grayScale.am" setNoRemoveAll 1
"grayScale.am" setVar "CustomHelp" {HxColormap256}
"grayScale.am" fire
"grayScale.am" setMinMax 0 255
"grayScale.am" flags setValue 1
"grayScale.am" shift setMinMax -1 1
"grayScale.am" shift setButtons 0
"grayScale.am" shift setEditButton 1
"grayScale.am" shift setIncrement 0.133333
"grayScale.am" shift setValue 0
"grayScale.am" shift setSubMinMax -1 1
"grayScale.am" scale setMinMax 0 1
"grayScale.am" scale setButtons 0
"grayScale.am" scale setEditButton 1
"grayScale.am" scale setIncrement 0.1
"grayScale.am" scale setValue 1
"grayScale.am" scale setSubMinMax 0 1
"grayScale.am" fire
"grayScale.am" setViewerMask 16383

set hideNewModules 1
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/labels.am ] setLabel "labels.am"
"labels.am" setIconPosition 0 0
"labels.am" setNoRemoveAll 1
"labels.am" setVar "CustomHelp" {HxColormap256}
"labels.am" fire
"labels.am" setMinMax 1 8
"labels.am" flags setValue 1
"labels.am" shift setMinMax -1 1
"labels.am" shift setButtons 0
"labels.am" shift setEditButton 1
"labels.am" shift setIncrement 0.133333
"labels.am" shift setValue 0
"labels.am" shift setSubMinMax -1 1
"labels.am" scale setMinMax 0 1
"labels.am" scale setButtons 0
"labels.am" scale setEditButton 1
"labels.am" scale setIncrement 0.1
"labels.am" scale setValue 1
"labels.am" scale setSubMinMax 0 1
"labels.am" fire
"labels.am" setViewerMask 16383

set hideNewModules 1
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/labels256.am ] setLabel "labels256.am"
"labels256.am" setIconPosition 0 0
"labels256.am" setNoRemoveAll 1
"labels256.am" setVar "CustomHelp" {HxColormap256}
"labels256.am" fire
"labels256.am" setMinMax 1 254
"labels256.am" flags setValue 1
"labels256.am" shift setMinMax -1 1
"labels256.am" shift setButtons 0
"labels256.am" shift setEditButton 1
"labels256.am" shift setIncrement 0.133333
"labels256.am" shift setValue 0
"labels256.am" shift setSubMinMax -1 1
"labels256.am" scale setMinMax 0 1
"labels256.am" scale setButtons 0
"labels256.am" scale setEditButton 1
"labels256.am" scale setIncrement 0.1
"labels256.am" scale setValue 1
"labels256.am" scale setSubMinMax 0 1
"labels256.am" fire
"labels256.am" setViewerMask 16383

set hideNewModules 0
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/00000000.tif.am ] setLabel "00000000.tif.am"
"00000000.tif.am" setIconPosition 20 10
"00000000.tif.am" setVar "CustomXML" {00000000.tif.am_config.xml}
"00000000.tif.am" sharedColormap disconnect
"00000000.tif.am" sharedColormap setDefaultColor 0.8 0.8 0.8
"00000000.tif.am" sharedColormap setDefaultAlpha 0.500000
"00000000.tif.am" sharedColormap activateLocalRange 1
"00000000.tif.am" sharedColormap setLocalMinMax 0.000000 1.000000
"00000000.tif.am" sharedColormap enableAlpha 1
"00000000.tif.am" sharedColormap enableAlphaToggle 1
"00000000.tif.am" sharedColormap setAutoAdjustRangeMode 1
"00000000.tif.am" sharedColormap setColorbarMinMax 0 234
"00000000.tif.am" fire
"00000000.tif.am" setViewerMask 16383

set hideNewModules 0
create medianfilter "Median Filter"
"Median Filter" setIconPosition 160 10
"Median Filter" setVar "CustomHelp" {medianfilter.html}
"Median Filter" setVar "CustomXML" {medianfilter_config.xml}
"Median Filter" interpretation setValue 1
"Median Filter" outputLocation setIndex 0 0
"Median Filter" inputImage connect "00000000.tif.am"
"Median Filter" type setIndex 0 0
"Median Filter" iterations setMinMax 0 1 2147483648
"Median Filter" iterations setValue 0 3
"Median Filter" applyTransformToResult 1
"Median Filter" fire
"Median Filter" setViewerMask 16383
"Median Filter" setPickable 1

set hideNewModules 0
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/00000000.tif.filtered ] setLabel "00000000.tif.filtered"
"00000000.tif.filtered" setIconPosition 20 115
"00000000.tif.filtered" setVar "CustomXML" {00000000.tif.filtered_config.xml}
"00000000.tif.filtered" master connect "Median Filter" "ImgOut" 0
"00000000.tif.filtered" sharedColormap disconnect
"00000000.tif.filtered" sharedColormap setDefaultColor 0.8 0.8 0.8
"00000000.tif.filtered" sharedColormap setDefaultAlpha 0.500000
"00000000.tif.filtered" sharedColormap activateLocalRange 1
"00000000.tif.filtered" sharedColormap setLocalMinMax 0.000000 1.000000
"00000000.tif.filtered" sharedColormap enableAlpha 1
"00000000.tif.filtered" sharedColormap enableAlphaToggle 1
"00000000.tif.filtered" sharedColormap setAutoAdjustRangeMode 1
"00000000.tif.filtered" fire
"00000000.tif.filtered" setViewerMask 16383

set hideNewModules 0
create HxFilterAMNLM "Non-Local Means Filter"
"Non-Local Means Filter" setIconPosition 160 150
"Non-Local Means Filter" setVar "CustomHelp" {HxFilterAMNLM}
"Non-Local Means Filter" setVar "CustomXML" {ModuleGroupNon-LocalMeansFilter_config.xml}
"Non-Local Means Filter" Mode setState {type GPU Adaptive Manifold}
"Non-Local Means Filter" data connect "00000000.tif.filtered"
"Non-Local Means Filter" interpretation setValue 1
"Non-Local Means Filter" spatialStandardDeviation setMinMax 0 1 20
"Non-Local Means Filter" spatialStandardDeviation setValue 0 5
"Non-Local Means Filter" intensityStandardDeviation setMinMax 0 0.00100000004749745 1
"Non-Local Means Filter" intensityStandardDeviation setValue 0 0.200000002980232
"Non-Local Means Filter" searchWindow setMinMax 0 1 100
"Non-Local Means Filter" searchWindow setValue 0 10
"Non-Local Means Filter" neighborhood setMinMax 0 1 2147483648
"Non-Local Means Filter" neighborhood setValue 0 3
"Non-Local Means Filter" device setValue 0
"Non-Local Means Filter" cudaDevice setIndex 0 0
"Non-Local Means Filter" setRandomSeed 1610648875
"Non-Local Means Filter" applyTransformToResult 1
"Non-Local Means Filter" fire
"Non-Local Means Filter" setViewerMask 16383
"Non-Local Means Filter" setPickable 1

set hideNewModules 0
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/00000000.tif2.filtered ] setLabel "00000000.tif2.filtered"
"00000000.tif2.filtered" setIconPosition 20 185
"00000000.tif2.filtered" setVar "CustomXML" {00000000.tif2.filtered_config.xml}
"00000000.tif2.filtered" master connect "Non-Local Means Filter" "result" 0
"00000000.tif2.filtered" sharedColormap disconnect
"00000000.tif2.filtered" sharedColormap setDefaultColor 0.8 0.8 0.8
"00000000.tif2.filtered" sharedColormap setDefaultAlpha 0.500000
"00000000.tif2.filtered" sharedColormap activateLocalRange 1
"00000000.tif2.filtered" sharedColormap setLocalMinMax 0.000000 1.000000
"00000000.tif2.filtered" sharedColormap enableAlpha 1
"00000000.tif2.filtered" sharedColormap enableAlphaToggle 1
"00000000.tif2.filtered" sharedColormap setAutoAdjustRangeMode 1
"00000000.tif2.filtered" sharedColormap setColorbarMinMax 0 210
"00000000.tif2.filtered" fire
"00000000.tif2.filtered" setViewerMask 16383

set hideNewModules 0
create HxOrthoSlice "Ortho Slice"
"Ortho Slice" setIconPosition 413 185
"Ortho Slice" setVar "CustomHelp" {HxOrthoSlice}
"Ortho Slice" setVar "CustomXML" {HxOrthoSlice_config.xml}
"Ortho Slice" data connect "00000000.tif2.filtered"
"Ortho Slice" fire
"Ortho Slice" sliceOrientation setValue 0
"Ortho Slice" fire
"Ortho Slice" origin  setBoundingBox -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038
"Ortho Slice" origin  setImmediateMode 0
"Ortho Slice" origin  setOrtho 0
"Ortho Slice" origin  showDragger 0
"Ortho Slice" origin  showPoints 0
"Ortho Slice" origin  setPointScale 1
"Ortho Slice" origin  showOptionButton 1
"Ortho Slice" origin  setNumPoints 1 1 1
"Ortho Slice" origin  setCoord 0 818.5 818.5 0.5
"Ortho Slice" normal  setBoundingBox -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038
"Ortho Slice" normal  setImmediateMode 0
"Ortho Slice" normal  setOrtho 0
"Ortho Slice" normal  showDragger 0
"Ortho Slice" normal  showPoints 0
"Ortho Slice" normal  setPointScale 1
"Ortho Slice" normal  showOptionButton 1
"Ortho Slice" normal  setNumPoints 1 1 1
"Ortho Slice" normal  setCoord 0 0 0 1
"Ortho Slice" options setValue 0 1
"Ortho Slice" options setToggleVisible 0 1
"Ortho Slice" options setValue 1 0
"Ortho Slice" options setToggleVisible 1 1
"Ortho Slice" options setValue 2 0
"Ortho Slice" options setToggleVisible 2 1
"Ortho Slice" mappingType setIndex 0 0
"Ortho Slice" contrastLimit setMinMax 0 -16777216 16777216
"Ortho Slice" contrastLimit setValue 0 7
"Ortho Slice" colormap connect "grayScale.am"
"Ortho Slice" colormap setDefaultColor 1 0.8 0.5
"Ortho Slice" colormap setDefaultAlpha 1.000000
"Ortho Slice" colormap activateLocalRange 1
"Ortho Slice" colormap setLocalMinMax 26.000000 234.000000
"Ortho Slice" colormap enableAlpha 1
"Ortho Slice" colormap enableAlphaToggle 1
"Ortho Slice" colormap setAutoAdjustRangeMode 1
"Ortho Slice" colormap setColorbarMinMax 26 234
"Ortho Slice" sliceNumber setMinMax 0 0
"Ortho Slice" sliceNumber setButtons 1
"Ortho Slice" sliceNumber setEditButton 1
"Ortho Slice" sliceNumber setIncrement 1
"Ortho Slice" sliceNumber setValue 0
"Ortho Slice" sliceNumber setSubMinMax 0 0
"Ortho Slice" transparency setValue 0
"Ortho Slice" alpha setMinMax 0 -16777216 16777216
"Ortho Slice" alpha setValue 0 0
"Ortho Slice" alpha setMinMax 1 -16777216 16777216
"Ortho Slice" alpha setValue 1 255
"Ortho Slice" frameSettings setState {item 0 1 item 2 1 color 3 1 0.5 0 }
"Ortho Slice" embossingOnOff setValue 0
"Ortho Slice" depth setMinMax -60 60
"Ortho Slice" depth setButtons 0
"Ortho Slice" depth setEditButton 1
"Ortho Slice" depth setIncrement 8
"Ortho Slice" depth setValue 2
"Ortho Slice" depth setSubMinMax -60 60
"Ortho Slice" fire

"Ortho Slice" fire
"Ortho Slice" setViewerMask 16382
"Ortho Slice" setShadowStyle 3
"Ortho Slice" setPickable 1

set hideNewModules 0
create graph_based_segmentation "GraphBasedSegmentation"
"GraphBasedSegmentation" setIconPosition 160 220
"GraphBasedSegmentation" setVar "CustomHelp" {graph_based_segmentation}
"GraphBasedSegmentation" setVar "CustomXML" {graph_based_segmentation_config.xml}
"GraphBasedSegmentation" data connect "00000000.tif2.filtered"
"GraphBasedSegmentation" fire
"GraphBasedSegmentation" kParam setMinMax 0 -3.40282346638529e+038 3.40282346638529e+038
"GraphBasedSegmentation" kParam setValue 0 450
"GraphBasedSegmentation" minSize setMinMax 0 -16777216 16777216
"GraphBasedSegmentation" minSize setValue 0 10
"GraphBasedSegmentation" applyTransformToResult 1
"GraphBasedSegmentation" fire
"GraphBasedSegmentation" setViewerMask 16383
"GraphBasedSegmentation" select
"GraphBasedSegmentation" kParam setPin 1
"GraphBasedSegmentation" minSize setPin 1
"GraphBasedSegmentation" deselect
"GraphBasedSegmentation" setPickable 1
"GraphBasedSegmentation" action snap 0 1

set hideNewModules 0
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/00000000.tif2.GraphBasedSegmentationsegmap ] setLabel "00000000.tif2.GraphBasedSegmentationsegmap"
"00000000.tif2.GraphBasedSegmentationsegmap" setIconPosition 20 255
"00000000.tif2.GraphBasedSegmentationsegmap" setVar "CustomXML" {00000000.tif2.GraphBasedSegmentationsegmap_config.xml}
"00000000.tif2.GraphBasedSegmentationsegmap" master connect "GraphBasedSegmentation" "result" 0
"00000000.tif2.GraphBasedSegmentationsegmap" sharedColormap connect "labels.am"
"00000000.tif2.GraphBasedSegmentationsegmap" sharedColormap setDefaultColor 0.8 0.8 0.8
"00000000.tif2.GraphBasedSegmentationsegmap" sharedColormap setDefaultAlpha 0.500000
"00000000.tif2.GraphBasedSegmentationsegmap" sharedColormap activateLocalRange 1
"00000000.tif2.GraphBasedSegmentationsegmap" sharedColormap setLocalMinMax 1.000000 8.000000
"00000000.tif2.GraphBasedSegmentationsegmap" sharedColormap enableAlpha 1
"00000000.tif2.GraphBasedSegmentationsegmap" sharedColormap enableAlphaToggle 1
"00000000.tif2.GraphBasedSegmentationsegmap" sharedColormap setAutoAdjustRangeMode 1
"00000000.tif2.GraphBasedSegmentationsegmap" sharedColormap setColorbarMinMax 1 8
"00000000.tif2.GraphBasedSegmentationsegmap" fire
"00000000.tif2.GraphBasedSegmentationsegmap" primary setIndex 0 0
"00000000.tif2.GraphBasedSegmentationsegmap" fire
"00000000.tif2.GraphBasedSegmentationsegmap" setViewerMask 16383

set hideNewModules 0
create HxFilterMeasureRange "Filter by Measure Range"
"Filter by Measure Range" setIconPosition 161 45
"Filter by Measure Range" setVar "CustomHelp" {HxFilterMeasureRange}
"Filter by Measure Range" setVar "CustomXML" {HxFilterMeasureRange_config.xml}
"Filter by Measure Range" data connect "00000000.tif2.GraphBasedSegmentationsegmap"
"Filter by Measure Range" intensityImage connect "00000000.tif.am"
"Filter by Measure Range" fire
"Filter by Measure Range" interpretation setValue 1
labelMeasure setAttributes feret2d 0 18 36 54 72 90 108 126 144 162
labelMeasure setAttributes feret3d 31
labelMeasure setAttributes cooccurrence 0 0
labelMeasure setAttributes histogram 1 0 255 1
labelMeasure setAttributes quantile 0.1 0.1 0.1 0.1 0.1 0.1
labelMeasure setAttributes breadth3d 10
labelMeasure setAttributes neighborCount 0 5 0
"Filter by Measure Range" measure setState {Shape_AP}
"Filter by Measure Range" fire
"Filter by Measure Range" range setMinMax -1.01999998092651 59.7266159057617
"Filter by Measure Range" range setValues 0 2.5
"Filter by Measure Range" range setButtons 0
"Filter by Measure Range" range setEditButton 1
"Filter by Measure Range" range setIncrement 4.04977
"Filter by Measure Range" range setSubMinMax 0 0
"Filter by Measure Range" options setValue 0 1
"Filter by Measure Range" options setToggleVisible 0 1
"Filter by Measure Range" applyTransformToResult 1
"Filter by Measure Range" fire
"Filter by Measure Range" setViewerMask 16383
"Filter by Measure Range" select
"Filter by Measure Range" measure setPin 1
"Filter by Measure Range" range setPin 1
"Filter by Measure Range" deselect
"Filter by Measure Range" setPickable 1
"Filter by Measure Range" action snap 0 1

set hideNewModules 0
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/00000000.tif3.filtered ] setLabel "00000000.tif3.filtered"
"00000000.tif3.filtered" setIconPosition 20 290
"00000000.tif3.filtered" setVar "CustomXML" {00000000.tif3.filtered_config.xml}
"00000000.tif3.filtered" master connect "Filter by Measure Range" "result" 0
"00000000.tif3.filtered" sharedColormap connect "labels.am"
"00000000.tif3.filtered" sharedColormap setDefaultColor 0.8 0.8 0.8
"00000000.tif3.filtered" sharedColormap setDefaultAlpha 0.500000
"00000000.tif3.filtered" sharedColormap activateLocalRange 1
"00000000.tif3.filtered" sharedColormap setLocalMinMax 1.000000 8.000000
"00000000.tif3.filtered" sharedColormap enableAlpha 1
"00000000.tif3.filtered" sharedColormap enableAlphaToggle 1
"00000000.tif3.filtered" sharedColormap setAutoAdjustRangeMode 1
"00000000.tif3.filtered" fire
"00000000.tif3.filtered" primary setIndex 0 0
"00000000.tif3.filtered" fire
"00000000.tif3.filtered" setViewerMask 16383

set hideNewModules 0
create HxFilterMeasureRange "Filter by Measure Range 2"
"Filter by Measure Range 2" setIconPosition 159 82
"Filter by Measure Range 2" setVar "CustomHelp" {HxFilterMeasureRange}
"Filter by Measure Range 2" setVar "CustomXML" {HxFilterMeasureRange_config.xml}
"Filter by Measure Range 2" data connect "00000000.tif3.filtered"
"Filter by Measure Range 2" intensityImage connect "00000000.tif.am"
"Filter by Measure Range 2" fire
"Filter by Measure Range 2" interpretation setValue 1
labelMeasure setAttributes feret2d 0 18 36 54 72 90 108 126 144 162
labelMeasure setAttributes feret3d 31
labelMeasure setAttributes cooccurrence 0 0
labelMeasure setAttributes histogram 1 0 255 1
labelMeasure setAttributes quantile 0.1 0.1 0.1 0.1 0.1 0.1
labelMeasure setAttributes breadth3d 10
labelMeasure setAttributes neighborCount 0 5 0
"Filter by Measure Range 2" measure setState {HistoQuantile90}
"Filter by Measure Range 2" fire
"Filter by Measure Range 2" range setMinMax 0 2518.92993164063
"Filter by Measure Range 2" range setValues 135 218.688
"Filter by Measure Range 2" range setButtons 0
"Filter by Measure Range 2" range setEditButton 1
"Filter by Measure Range 2" range setIncrement 167.929
"Filter by Measure Range 2" range setSubMinMax 0 0
"Filter by Measure Range 2" options setValue 0 1
"Filter by Measure Range 2" options setToggleVisible 0 1
"Filter by Measure Range 2" applyTransformToResult 1
"Filter by Measure Range 2" fire
"Filter by Measure Range 2" setViewerMask 16383
"Filter by Measure Range 2" select
"Filter by Measure Range 2" measure setPin 1
"Filter by Measure Range 2" range setPin 1
"Filter by Measure Range 2" deselect
"Filter by Measure Range 2" setPickable 1
"Filter by Measure Range 2" action snap 0 1

set hideNewModules 0
[ load ${SCRIPTDIR}/GraphBasedSegmentation_volumescope-files/00000000.tif4.filtered ] setLabel "00000000.tif4.filtered"
"00000000.tif4.filtered" setIconPosition 20 325
"00000000.tif4.filtered" master connect "Filter by Measure Range 2" "result" 0
"00000000.tif4.filtered" sharedColormap connect "labels.am"
"00000000.tif4.filtered" sharedColormap setDefaultColor 0.8 0.8 0.8
"00000000.tif4.filtered" sharedColormap setDefaultAlpha 0.500000
"00000000.tif4.filtered" sharedColormap activateLocalRange 1
"00000000.tif4.filtered" sharedColormap setLocalMinMax 1.000000 8.000000
"00000000.tif4.filtered" sharedColormap enableAlpha 1
"00000000.tif4.filtered" sharedColormap enableAlphaToggle 1
"00000000.tif4.filtered" sharedColormap setAutoAdjustRangeMode 1
"00000000.tif4.filtered" fire
"00000000.tif4.filtered" primary setIndex 0 0
"00000000.tif4.filtered" fire
"00000000.tif4.filtered" setViewerMask 16383

set hideNewModules 0
create HxColorwash "Color Wash"
"Color Wash" setIconPosition 413 210
"Color Wash" setVar "CustomHelp" {HxColorwash}
"Color Wash" setVar "CustomXML" {HxColorwash_config.xml}
"Color Wash" data connect "00000000.tif4.filtered"
"Color Wash" module connect "Ortho Slice"
"Color Wash" colormap connect "labels256.am"
"Color Wash" colormap setDefaultColor 1 0.8 0.5
"Color Wash" colormap setDefaultAlpha 0.500000
"Color Wash" colormap activateLocalRange 1
"Color Wash" colormap setLocalMinMax 1.000000 254.000000
"Color Wash" colormap enableAlpha 1
"Color Wash" colormap enableAlphaToggle 1
"Color Wash" colormap setAutoAdjustRangeMode 1
"Color Wash" fire
"Color Wash" mode setIndex 0 7
"Color Wash" weightFactor setMinMax 0 1
"Color Wash" weightFactor setButtons 0
"Color Wash" weightFactor setEditButton 1
"Color Wash" weightFactor setIncrement 0.1
"Color Wash" weightFactor setValue 0.5
"Color Wash" weightFactor setSubMinMax 0 1
"Color Wash" lenseWidth setMinMax 5 80
"Color Wash" lenseWidth setButtons 1
"Color Wash" lenseWidth setEditButton 1
"Color Wash" lenseWidth setIncrement 1
"Color Wash" lenseWidth setValue 30
"Color Wash" lenseWidth setSubMinMax 5 80
"Color Wash" overlayRange setMinMax 0 -3.40282346638529e+038 3.40282346638529e+038
"Color Wash" overlayRange setValue 0 100
"Color Wash" overlayRange setMinMax 1 -3.40282346638529e+038 3.40282346638529e+038
"Color Wash" overlayRange setValue 1 1000
"Color Wash" transparency setMinMax 0 1
"Color Wash" transparency setButtons 0
"Color Wash" transparency setEditButton 1
"Color Wash" transparency setIncrement 0.1
"Color Wash" transparency setValue 0.148148
"Color Wash" transparency setSubMinMax 0 1
"Color Wash" options setValue 0 0
"Color Wash" options setToggleVisible 0 1
"Color Wash" options setValue 1 1
"Color Wash" options setToggleVisible 1 1
"Color Wash" generalOptions setValue 0 0
"Color Wash" generalOptions setToggleVisible 0 1
"Color Wash" fire
"Color Wash" setViewerMask 16383
"Color Wash" setPickable 1

set hideNewModules 0
create HxOrthoSlice "Ortho Slice 2"
"Ortho Slice 2" setIconPosition 404 10
"Ortho Slice 2" setVar "CustomHelp" {HxOrthoSlice}
"Ortho Slice 2" setVar "CustomXML" {HxOrthoSlice_config.xml}
"Ortho Slice 2" data connect "00000000.tif.am"
"Ortho Slice 2" fire
"Ortho Slice 2" sliceOrientation setValue 0
"Ortho Slice 2" fire
"Ortho Slice 2" origin  setBoundingBox -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038
"Ortho Slice 2" origin  setImmediateMode 0
"Ortho Slice 2" origin  setOrtho 0
"Ortho Slice 2" origin  showDragger 0
"Ortho Slice 2" origin  showPoints 0
"Ortho Slice 2" origin  setPointScale 1
"Ortho Slice 2" origin  showOptionButton 1
"Ortho Slice 2" origin  setNumPoints 1 1 1
"Ortho Slice 2" origin  setCoord 0 818.5 818.5 0.5
"Ortho Slice 2" normal  setBoundingBox -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038
"Ortho Slice 2" normal  setImmediateMode 0
"Ortho Slice 2" normal  setOrtho 0
"Ortho Slice 2" normal  showDragger 0
"Ortho Slice 2" normal  showPoints 0
"Ortho Slice 2" normal  setPointScale 1
"Ortho Slice 2" normal  showOptionButton 1
"Ortho Slice 2" normal  setNumPoints 1 1 1
"Ortho Slice 2" normal  setCoord 0 0 0 1
"Ortho Slice 2" options setValue 0 0
"Ortho Slice 2" options setToggleVisible 0 1
"Ortho Slice 2" options setValue 1 0
"Ortho Slice 2" options setToggleVisible 1 1
"Ortho Slice 2" options setValue 2 0
"Ortho Slice 2" options setToggleVisible 2 1
"Ortho Slice 2" mappingType setIndex 0 0
"Ortho Slice 2" contrastLimit setMinMax 0 -16777216 16777216
"Ortho Slice 2" contrastLimit setValue 0 7
"Ortho Slice 2" colormap connect "grayScale.am"
"Ortho Slice 2" colormap setDefaultColor 1 0.8 0.5
"Ortho Slice 2" colormap setDefaultAlpha 1.000000
"Ortho Slice 2" colormap activateLocalRange 1
"Ortho Slice 2" colormap setLocalMinMax 26.000000 234.000000
"Ortho Slice 2" colormap enableAlpha 1
"Ortho Slice 2" colormap enableAlphaToggle 1
"Ortho Slice 2" colormap setAutoAdjustRangeMode 1
"Ortho Slice 2" colormap setColorbarMinMax 26 234
"Ortho Slice 2" sliceNumber setMinMax 0 0
"Ortho Slice 2" sliceNumber setButtons 1
"Ortho Slice 2" sliceNumber setEditButton 1
"Ortho Slice 2" sliceNumber setIncrement 1
"Ortho Slice 2" sliceNumber setValue 0
"Ortho Slice 2" sliceNumber setSubMinMax 0 0
"Ortho Slice 2" transparency setValue 0
"Ortho Slice 2" alpha setMinMax 0 -16777216 16777216
"Ortho Slice 2" alpha setValue 0 0
"Ortho Slice 2" alpha setMinMax 1 -16777216 16777216
"Ortho Slice 2" alpha setValue 1 255
"Ortho Slice 2" frameSettings setState {item 0 1 item 2 1 color 3 1 0.5 0 }
"Ortho Slice 2" embossingOnOff setValue 0
"Ortho Slice 2" depth setMinMax -60 60
"Ortho Slice 2" depth setButtons 0
"Ortho Slice 2" depth setEditButton 1
"Ortho Slice 2" depth setIncrement 8
"Ortho Slice 2" depth setValue 2
"Ortho Slice 2" depth setSubMinMax -60 60
"Ortho Slice 2" fire

"Ortho Slice 2" fire
"Ortho Slice 2" setViewerMask 16381
"Ortho Slice 2" setShadowStyle 3
"Ortho Slice 2" setPickable 1

set hideNewModules 0

viewer 0 setCameraOrientation 1 0 0 3.14159
viewer 0 setCameraPosition 818.5 818.5 -2086.12
viewer 0 setCameraFocalDistance 2086.62
viewer 0 setCameraNearDistance 2084.54
viewer 0 setCameraFarDistance 2088.71
viewer 0 setCameraType perspective
viewer 0 setCameraHeightAngle 44.9023
viewer 0 linkViewer 1
viewer 0 setAutoRedraw 1
viewer 0 redraw

viewer 1 setCameraOrientation 1 0 0 3.14159
viewer 1 setCameraPosition 818.5 818.5 -2086.12
viewer 1 setCameraFocalDistance 2086.62
viewer 1 setCameraNearDistance 2084.54
viewer 1 setCameraFarDistance 2088.71
viewer 1 setCameraType perspective
viewer 1 setCameraHeightAngle 44.9023
viewer 1 linkViewer 0
viewer 1 setAutoRedraw 1
viewer 1 redraw

correlationPanel closeTabs
correlationPanel setTabName 0 "Correlation 1"
correlationPanel 0 setLogScalingOnAxis 0 0
correlationPanel 0 setLogScalingOnAxis 1 0

histogramPanel closeTabs
histogramPanel setTabName 0 "Histogram 1"
histogramPanel 0 setLogScalingOnAxis 0 0
histogramPanel 0 setLogScalingOnAxis 1 1

