# Amira Project 202020
# Amira
# Generated by Amira 2020.2
remove -all
remove "physics.icol" "labels.am" "6s61.pdb" "ApoF-SPA-Map.am" "6s61-chainA.amf" "Secondary Structure View" "Isosurface" "Molecule View" "Secondary Structure View 2"

# Create viewers
viewer setVertical 0

viewer 0 setTransparencyType 6
viewer 0 setAutoRedraw 0
viewer 0 show
mainWindow show

#_units setUnitsManagementMode 0

set hideNewModules 1
[ load ${AMIRA_ROOT}/data/colormaps/physics.icol ] setLabel "physics.icol"
"physics.icol" setIconPosition 0 0
"physics.icol" setNoRemoveAll 1
"physics.icol" fire
"physics.icol" setMinMax 0 1
"physics.icol" flags setValue 1
"physics.icol" shift setMinMax -1 1
"physics.icol" shift setButtons 0
"physics.icol" shift setEditButton 1
"physics.icol" shift setIncrement 0.133333
"physics.icol" shift setValue 0
"physics.icol" shift setSubMinMax -1 1
"physics.icol" scale setMinMax 0 1
"physics.icol" scale setButtons 0
"physics.icol" scale setEditButton 1
"physics.icol" scale setIncrement 0.1
"physics.icol" scale setValue 1
"physics.icol" scale setSubMinMax 0 1
"physics.icol" fire
"physics.icol" setViewerMask 16383

set hideNewModules 1
[ load ${AMIRA_ROOT}/data/colormaps/labels.am ] setLabel "labels.am"
"labels.am" setIconPosition 0 0
"labels.am" setNoRemoveAll 1
"labels.am" setVar "CustomHelp" {HxColormap256}
"labels.am" fire
"labels.am" setMinMax 1 8
"labels.am" flags setValue 1
"labels.am" shift setMinMax -1 1
"labels.am" shift setButtons 0
"labels.am" shift setEditButton 1
"labels.am" shift setIncrement 0.133333
"labels.am" shift setValue 0
"labels.am" shift setSubMinMax -1 1
"labels.am" scale setMinMax 0 1
"labels.am" scale setButtons 0
"labels.am" scale setEditButton 1
"labels.am" scale setIncrement 0.1
"labels.am" scale setValue 1
"labels.am" scale setSubMinMax 0 1
"labels.am" fire
"labels.am" setViewerMask 16383

set hideNewModules 0
[ load ${SCRIPTDIR}/6s61.pdb ] setLabel "6s61.pdb"
"6s61.pdb" setIconPosition 20 10
"6s61.pdb" setVar "CustomXML" {6s61.pdb_config.xml}
"6s61.pdb" fire
"6s61.pdb" time setMinMax 0 1
"6s61.pdb" time setSubMinMax 0 1
"6s61.pdb" time setValue 0
"6s61.pdb" time setDiscrete 1
"6s61.pdb" time setIncrement 1
"6s61.pdb" time animationMode -once
"6s61.pdb" time setAnimationDelay 10
"6s61.pdb" transformation setIndex 0 0
"6s61.pdb" selection setOptValue 0 0
"6s61.pdb" fire
"6s61.pdb" fire
"6s61.pdb" setViewerMask 16383

set hideNewModules 0
[ load ${SCRIPTDIR}/ApoF-SPA-Map.am ] setLabel "ApoF-SPA-Map.am"
"ApoF-SPA-Map.am" setIconPosition 20 44
"ApoF-SPA-Map.am" setVar "CustomXML" {ApoF-SPA-Map.am_config.xml}
"ApoF-SPA-Map.am" sharedColormap disconnect
"ApoF-SPA-Map.am" sharedColormap setDefaultColor 0.8 0.8 0.8
"ApoF-SPA-Map.am" sharedColormap setDefaultAlpha 0.500000
"ApoF-SPA-Map.am" sharedColormap activateLocalRange 1
"ApoF-SPA-Map.am" sharedColormap setLocalMinMax 0.000000 1.000000
"ApoF-SPA-Map.am" sharedColormap enableAlpha 1
"ApoF-SPA-Map.am" sharedColormap enableAlphaToggle 1
"ApoF-SPA-Map.am" sharedColormap setAutoAdjustRangeMode 1
"ApoF-SPA-Map.am" sharedColormap setColorbarMinMax 0 120
"ApoF-SPA-Map.am" fire
"ApoF-SPA-Map.am" setViewerMask 16383

set hideNewModules 0
[ load -amf ${SCRIPTDIR}/6s61-chainA.amf ] setLabel "6s61-chainA.amf"
"6s61-chainA.amf" setIconPosition 20 78
"6s61-chainA.amf" setVar "CustomXML" {6s61-chainA.amf_config.xml}
"6s61-chainA.amf" fire
"6s61-chainA.amf" time setMinMax 0 1
"6s61-chainA.amf" time setSubMinMax 0 1
"6s61-chainA.amf" time setValue 0
"6s61-chainA.amf" time setDiscrete 1
"6s61-chainA.amf" time setIncrement 1
"6s61-chainA.amf" time animationMode -once
"6s61-chainA.amf" time setAnimationDelay 10
"6s61-chainA.amf" transformation setIndex 0 0
"6s61-chainA.amf" selection setOptValue 0 0
"6s61-chainA.amf" fire
"6s61-chainA.amf" fire
"6s61-chainA.amf" setViewerMask 16383

set hideNewModules 0
create HxSecStructure "Secondary Structure View"
"Secondary Structure View" setIconPosition 447 10
"Secondary Structure View" setVar "CustomHelp" {HxSecStructure}
"Secondary Structure View" setVar "CustomXML" {HxSecStructure_config.xml}
"Secondary Structure View" data connect "6s61.pdb"
"Secondary Structure View" discreteColormapBB disconnect
"Secondary Structure View" discreteColormapBB setDefaultColor 0.78 0.78 0.78
"Secondary Structure View" discreteColormapBB setDefaultAlpha 1.000000
"Secondary Structure View" discreteColormapBB activateLocalRange 1
"Secondary Structure View" discreteColormapBB setLocalMinMax 0.000000 0.000000
"Secondary Structure View" discreteColormapBB enableAlpha 1
"Secondary Structure View" discreteColormapBB enableAlphaToggle 1
"Secondary Structure View" discreteColormapBB setAutoAdjustRangeMode 1
"Secondary Structure View" discreteColormapBB setColorbarMinMax 0 120
"Secondary Structure View" continuousColormapBB disconnect
"Secondary Structure View" continuousColormapBB setDefaultColor 0.78 0.78 0.78
"Secondary Structure View" continuousColormapBB setDefaultAlpha 1.000000
"Secondary Structure View" continuousColormapBB activateLocalRange 1
"Secondary Structure View" continuousColormapBB setLocalMinMax 1.000000 8012.000000
"Secondary Structure View" continuousColormapBB enableAlpha 1
"Secondary Structure View" continuousColormapBB enableAlphaToggle 1
"Secondary Structure View" continuousColormapBB setAutoAdjustRangeMode 1
"Secondary Structure View" continuousColormapBB setColorbarMinMax 0 8012
"Secondary Structure View" discreteColormapH disconnect
"Secondary Structure View" discreteColormapH setDefaultColor 0.3 0.3 0.9
"Secondary Structure View" discreteColormapH setDefaultAlpha 1.000000
"Secondary Structure View" discreteColormapH activateLocalRange 1
"Secondary Structure View" discreteColormapH setLocalMinMax 0.000000 0.000000
"Secondary Structure View" discreteColormapH enableAlpha 1
"Secondary Structure View" discreteColormapH enableAlphaToggle 1
"Secondary Structure View" discreteColormapH setAutoAdjustRangeMode 1
"Secondary Structure View" discreteColormapH setColorbarMinMax 0 120
"Secondary Structure View" continuousColormapH connect "labels.am"
"Secondary Structure View" continuousColormapH setDefaultColor 0.3 0.3 0.9
"Secondary Structure View" continuousColormapH setDefaultAlpha 1.000000
"Secondary Structure View" continuousColormapH activateLocalRange 1
"Secondary Structure View" continuousColormapH setLocalMinMax 1.000000 8.000000
"Secondary Structure View" continuousColormapH enableAlpha 1
"Secondary Structure View" continuousColormapH enableAlphaToggle 1
"Secondary Structure View" continuousColormapH setAutoAdjustRangeMode 1
"Secondary Structure View" continuousColormapH setColorbarMinMax 1 144
"Secondary Structure View" discreteColormapS disconnect
"Secondary Structure View" discreteColormapS setDefaultColor 0.9 0.2 0.2
"Secondary Structure View" discreteColormapS setDefaultAlpha 1.000000
"Secondary Structure View" discreteColormapS activateLocalRange 1
"Secondary Structure View" discreteColormapS setLocalMinMax 0.000000 0.000000
"Secondary Structure View" discreteColormapS enableAlpha 1
"Secondary Structure View" discreteColormapS enableAlphaToggle 1
"Secondary Structure View" discreteColormapS setAutoAdjustRangeMode 1
"Secondary Structure View" discreteColormapS setColorbarMinMax 0 120
"Secondary Structure View" continuousColormapS disconnect
"Secondary Structure View" continuousColormapS setDefaultColor 0.9 0.2 0.2
"Secondary Structure View" continuousColormapS setDefaultAlpha 1.000000
"Secondary Structure View" continuousColormapS activateLocalRange 1
"Secondary Structure View" continuousColormapS setLocalMinMax 1.000000 8012.000000
"Secondary Structure View" continuousColormapS enableAlpha 1
"Secondary Structure View" continuousColormapS enableAlphaToggle 1
"Secondary Structure View" continuousColormapS setAutoAdjustRangeMode 1
"Secondary Structure View" continuousColormapS setColorbarMinMax 0 8012
"Secondary Structure View" discreteColormapT disconnect
"Secondary Structure View" discreteColormapT setDefaultColor 0.4 0.4 0.4
"Secondary Structure View" discreteColormapT setDefaultAlpha 1.000000
"Secondary Structure View" discreteColormapT activateLocalRange 1
"Secondary Structure View" discreteColormapT setLocalMinMax 0.000000 0.000000
"Secondary Structure View" discreteColormapT enableAlpha 1
"Secondary Structure View" discreteColormapT enableAlphaToggle 1
"Secondary Structure View" discreteColormapT setAutoAdjustRangeMode 1
"Secondary Structure View" discreteColormapT setColorbarMinMax 0 120
"Secondary Structure View" continuousColormapT disconnect
"Secondary Structure View" continuousColormapT setDefaultColor 0.4 0.4 0.4
"Secondary Structure View" continuousColormapT setDefaultAlpha 1.000000
"Secondary Structure View" continuousColormapT activateLocalRange 1
"Secondary Structure View" continuousColormapT setLocalMinMax 1.000000 8012.000000
"Secondary Structure View" continuousColormapT enableAlpha 1
"Secondary Structure View" continuousColormapT enableAlphaToggle 1
"Secondary Structure View" continuousColormapT setAutoAdjustRangeMode 1
"Secondary Structure View" continuousColormapT setColorbarMinMax 0 8012
"Secondary Structure View" fire
"Secondary Structure View" selectAtoms zab HIJMONMBABABAAAAAAICKAPPKLGNEIEAABAAAAAAAAAAAAAAPAGKGOKOBLMD
"Secondary Structure View" generalShape setValue 3
"Secondary Structure View" threadsLineWidth setMinMax 1 3
"Secondary Structure View" threadsLineWidth setButtons 1
"Secondary Structure View" threadsLineWidth setEditButton 1
"Secondary Structure View" threadsLineWidth setIncrement 1
"Secondary Structure View" threadsLineWidth setValue 1
"Secondary Structure View" threadsLineWidth setSubMinMax 1 3
"Secondary Structure View" options setValue 1
"Secondary Structure View" helixShape setValue 1
"Secondary Structure View" sheetShape setValue 1
"Secondary Structure View" backboneWidth setMinMax 0.100000001490116 5
"Secondary Structure View" backboneWidth setButtons 0
"Secondary Structure View" backboneWidth setEditButton 1
"Secondary Structure View" backboneWidth setIncrement 0.326667
"Secondary Structure View" backboneWidth setValue 0.5
"Secondary Structure View" backboneWidth setSubMinMax 0.100000001490116 5
"Secondary Structure View" helixWidth setMinMax 0.5 5
"Secondary Structure View" helixWidth setButtons 0
"Secondary Structure View" helixWidth setEditButton 1
"Secondary Structure View" helixWidth setIncrement 0.3
"Secondary Structure View" helixWidth setValue 3.5
"Secondary Structure View" helixWidth setSubMinMax 0.5 5
"Secondary Structure View" sheetWidth setMinMax 0.5 5
"Secondary Structure View" sheetWidth setButtons 0
"Secondary Structure View" sheetWidth setEditButton 1
"Secondary Structure View" sheetWidth setIncrement 0.3
"Secondary Structure View" sheetWidth setValue 4.5
"Secondary Structure View" sheetWidth setSubMinMax 0.5 5
"Secondary Structure View" turnWidth setMinMax 0.5 5
"Secondary Structure View" turnWidth setButtons 0
"Secondary Structure View" turnWidth setEditButton 1
"Secondary Structure View" turnWidth setIncrement 0.3
"Secondary Structure View" turnWidth setValue 1
"Secondary Structure View" turnWidth setSubMinMax 0.5 5
"Secondary Structure View" backboneEccentricity setMinMax 0 1
"Secondary Structure View" backboneEccentricity setButtons 0
"Secondary Structure View" backboneEccentricity setEditButton 1
"Secondary Structure View" backboneEccentricity setIncrement 0.1
"Secondary Structure View" backboneEccentricity setValue 0
"Secondary Structure View" backboneEccentricity setSubMinMax 0 1
"Secondary Structure View" helixEccentricity setMinMax 0 1
"Secondary Structure View" helixEccentricity setButtons 0
"Secondary Structure View" helixEccentricity setEditButton 1
"Secondary Structure View" helixEccentricity setIncrement 0.1
"Secondary Structure View" helixEccentricity setValue 0.7
"Secondary Structure View" helixEccentricity setSubMinMax 0 1
"Secondary Structure View" sheetEccentricity setMinMax 0 1
"Secondary Structure View" sheetEccentricity setButtons 0
"Secondary Structure View" sheetEccentricity setEditButton 1
"Secondary Structure View" sheetEccentricity setIncrement 0.1
"Secondary Structure View" sheetEccentricity setValue 0.8
"Secondary Structure View" sheetEccentricity setSubMinMax 0 1
"Secondary Structure View" turnEccentricity setMinMax 0 1
"Secondary Structure View" turnEccentricity setButtons 0
"Secondary Structure View" turnEccentricity setEditButton 1
"Secondary Structure View" turnEccentricity setIncrement 0.1
"Secondary Structure View" turnEccentricity setValue 0
"Secondary Structure View" turnEccentricity setSubMinMax 0 1
"Secondary Structure View" backboneTubeRadius setMinMax 0.100000001490116 0.5
"Secondary Structure View" backboneTubeRadius setButtons 0
"Secondary Structure View" backboneTubeRadius setEditButton 1
"Secondary Structure View" backboneTubeRadius setIncrement 0.0266667
"Secondary Structure View" backboneTubeRadius setValue 0.2
"Secondary Structure View" backboneTubeRadius setSubMinMax 0.100000001490116 0.5
"Secondary Structure View" colorSchemeBB setOptValue 0 0
"Secondary Structure View" colorSchemeBB setOptValue 1 0
"Secondary Structure View" helixTubeRadius setMinMax 0.100000001490116 2
"Secondary Structure View" helixTubeRadius setButtons 0
"Secondary Structure View" helixTubeRadius setEditButton 1
"Secondary Structure View" helixTubeRadius setIncrement 0.126667
"Secondary Structure View" helixTubeRadius setValue 0.5
"Secondary Structure View" helixTubeRadius setSubMinMax 0.100000001490116 2
"Secondary Structure View" helixCylinderRadius setMinMax 1 4
"Secondary Structure View" helixCylinderRadius setButtons 0
"Secondary Structure View" helixCylinderRadius setEditButton 1
"Secondary Structure View" helixCylinderRadius setIncrement 0.2
"Secondary Structure View" helixCylinderRadius setValue 2.1
"Secondary Structure View" helixCylinderRadius setSubMinMax 1 4
"Secondary Structure View" helixRibbonWidth setMinMax 0.5 7
"Secondary Structure View" helixRibbonWidth setButtons 0
"Secondary Structure View" helixRibbonWidth setEditButton 1
"Secondary Structure View" helixRibbonWidth setIncrement 0.433333
"Secondary Structure View" helixRibbonWidth setValue 3
"Secondary Structure View" helixRibbonWidth setSubMinMax 0.5 7
"Secondary Structure View" colorSchemeH setOptValue 0 1
"Secondary Structure View" colorSchemeH setOptValue 1 1
"Secondary Structure View" sheetArrowWidth setMinMax 0.5 5
"Secondary Structure View" sheetArrowWidth setButtons 0
"Secondary Structure View" sheetArrowWidth setEditButton 1
"Secondary Structure View" sheetArrowWidth setIncrement 0.3
"Secondary Structure View" sheetArrowWidth setValue 1.5
"Secondary Structure View" sheetArrowWidth setSubMinMax 0.5 5
"Secondary Structure View" sheetArrowHeight setMinMax 0 0.5
"Secondary Structure View" sheetArrowHeight setButtons 0
"Secondary Structure View" sheetArrowHeight setEditButton 1
"Secondary Structure View" sheetArrowHeight setIncrement 0.0333333
"Secondary Structure View" sheetArrowHeight setValue 0.2
"Secondary Structure View" sheetArrowHeight setSubMinMax 0 0.5
"Secondary Structure View" sheetArrowOptions setValue 0 1
"Secondary Structure View" sheetArrowOptions setToggleVisible 0 1
"Secondary Structure View" sheetArrowOptions setValue 1 1
"Secondary Structure View" sheetArrowOptions setToggleVisible 1 1
"Secondary Structure View" sheetRadius setMinMax 0.100000001490116 2
"Secondary Structure View" sheetRadius setButtons 0
"Secondary Structure View" sheetRadius setEditButton 1
"Secondary Structure View" sheetRadius setIncrement 0.126667
"Secondary Structure View" sheetRadius setValue 0.3
"Secondary Structure View" sheetRadius setSubMinMax 0.100000001490116 2
"Secondary Structure View" colorSchemeS setOptValue 0 0
"Secondary Structure View" colorSchemeS setOptValue 1 0
"Secondary Structure View" turnTubeRadius setMinMax 0.100000001490116 2
"Secondary Structure View" turnTubeRadius setButtons 0
"Secondary Structure View" turnTubeRadius setEditButton 1
"Secondary Structure View" turnTubeRadius setIncrement 0.126667
"Secondary Structure View" turnTubeRadius setValue 0.3
"Secondary Structure View" turnTubeRadius setSubMinMax 0.100000001490116 2
"Secondary Structure View" colorSchemeT setOptValue 0 0
"Secondary Structure View" colorSchemeT setOptValue 1 0
"Secondary Structure View" structures setValue 0 1
"Secondary Structure View" structures setToggleVisible 0 1
"Secondary Structure View" structures setValue 1 1
"Secondary Structure View" structures setToggleVisible 1 1
"Secondary Structure View" structures setValue 2 1
"Secondary Structure View" structures setToggleVisible 2 1
"Secondary Structure View" structures setValue 3 1
"Secondary Structure View" structures setToggleVisible 3 1
"Secondary Structure View" complexity setMinMax 0 1
"Secondary Structure View" complexity setButtons 0
"Secondary Structure View" complexity setEditButton 1
"Secondary Structure View" complexity setIncrement 0.1
"Secondary Structure View" complexity setValue 0.5
"Secondary Structure View" complexity setSubMinMax 0 1
"Secondary Structure View" highlightingColor setColor 0 0.949 0.847 0.09
"Secondary Structure View" filterOptions setValue 0 0
"Secondary Structure View" filterOptions setToggleVisible 0 1
"Secondary Structure View" filterOptions setValue 1 0
"Secondary Structure View" filterOptions setToggleVisible 1 1
"Secondary Structure View" fire
"Secondary Structure View" discreteColormapBB setLocalMinMax 0.000000 0.000000
"Secondary Structure View" continuousColormapBB setLocalMinMax 1.000000 8012.000000
"Secondary Structure View" discreteColormapH setLocalMinMax 0.000000 0.000000
"Secondary Structure View" continuousColormapH setLocalMinMax 1.000000 8.000000
"Secondary Structure View" discreteColormapS setLocalMinMax 0.000000 0.000000
"Secondary Structure View" continuousColormapS setLocalMinMax 1.000000 8012.000000
"Secondary Structure View" discreteColormapT setLocalMinMax 0.000000 0.000000
"Secondary Structure View" continuousColormapT setLocalMinMax 1.000000 8012.000000
"Secondary Structure View" fire
"Secondary Structure View" setViewerMask 16383
"Secondary Structure View" setPickable 1

set hideNewModules 0
create HxIsosurface "Isosurface"
"Isosurface" setIconPosition 528 44
"Isosurface" setVar "CustomHelp" {HxIsosurface}
"Isosurface" setVar "CustomXML" {HxIsosurface_config.xml}
"Isosurface" data connect "ApoF-SPA-Map.am"
"Isosurface" colormap disconnect
"Isosurface" colormap setDefaultColor 1 0.8 0.4
"Isosurface" colormap setDefaultAlpha 0.500000
"Isosurface" colormap activateLocalRange 1
"Isosurface" colormap setLocalMinMax -0.149857 0.310351
"Isosurface" colormap enableAlpha 1
"Isosurface" colormap enableAlphaToggle 1
"Isosurface" colormap setAutoAdjustRangeMode 1
"Isosurface" colormap setColorbarMinMax -0.149857 0.310351
"Isosurface" fire
"Isosurface" drawStyle setValue 4
"Isosurface" fire
"Isosurface" drawStyle setSpecularLighting 1
"Isosurface" drawStyle setTexture 0
"Isosurface" drawStyle setAlphaMode 3
"Isosurface" drawStyle setCullingMode 0
"Isosurface" drawStyle setNormalBinding 1
"Isosurface" drawStyle setSortingMode 1
"Isosurface" drawStyle setLineWidth 1.000000
"Isosurface" drawStyle setOutlineColor 0 0 0.2
"Isosurface" textureWrap setIndex 0 1
"Isosurface" threshold setMinMax -0.149856954813004 0.310350924730301
"Isosurface" threshold setButtons 0
"Isosurface" threshold setEditButton 1
"Isosurface" threshold setIncrement 0.0306805
"Isosurface" threshold setValue 0.0667115
"Isosurface" threshold setSubMinMax -0.149856954813004 0.310350924730301
"Isosurface" options setValue 0 1
"Isosurface" options setToggleVisible 0 1
"Isosurface" downSampleOnOff setValue 0
"Isosurface" resolution setMinMax 0 -16777216 16777216
"Isosurface" resolution setValue 0 2
"Isosurface" resolution setMinMax 1 -16777216 16777216
"Isosurface" resolution setValue 1 2
"Isosurface" resolution setMinMax 2 -16777216 16777216
"Isosurface" resolution setValue 2 2
"Isosurface" numberOfCores setMinMax 1 12
"Isosurface" numberOfCores setButtons 1
"Isosurface" numberOfCores setEditButton 1
"Isosurface" numberOfCores setIncrement 1
"Isosurface" numberOfCores setValue 12
"Isosurface" numberOfCores setSubMinMax 1 12
"Isosurface" setLighting 1
"Isosurface" doIt hit
"Isosurface" fire
"Isosurface" setViewerMask 16383
"Isosurface" setShadowStyle 3
"Isosurface" setPickable 1
"Isosurface" doIt snap 0 1

set hideNewModules 0
create HxMolView "Molecule View"
"Molecule View" setIconPosition 507 78
"Molecule View" setVar "CustomHelp" {HxMolView}
"Molecule View" setVar "CustomXML" {HxMolView_config.xml}
"Molecule View" data connect "6s61-chainA.amf"
"Molecule View" continuousColormap disconnect
"Molecule View" continuousColormap setDefaultColor 0 0 1
"Molecule View" continuousColormap setDefaultAlpha 1.000000
"Molecule View" continuousColormap activateLocalRange 1
"Molecule View" continuousColormap setLocalMinMax 0.000000 0.000000
"Molecule View" continuousColormap enableAlpha 1
"Molecule View" continuousColormap enableAlphaToggle 1
"Molecule View" continuousColormap setAutoAdjustRangeMode 1
"Molecule View" continuousColormap setColorbarMinMax 0 120
"Molecule View" discreteColormap disconnect
"Molecule View" discreteColormap setDefaultColor 0 0 1
"Molecule View" discreteColormap setDefaultAlpha 1.000000
"Molecule View" discreteColormap activateLocalRange 1
"Molecule View" discreteColormap setLocalMinMax 1.000000 16.000000
"Molecule View" discreteColormap enableAlpha 1
"Molecule View" discreteColormap enableAlphaToggle 1
"Molecule View" discreteColormap setAutoAdjustRangeMode 1
"Molecule View" discreteColormap setColorbarMinMax 0 120
"Molecule View" fire
"Molecule View" selectAtoms zab HIJMPLPPHPBENAAKAAAAFHPKFKLE
"Molecule View" mode setValue 1
"Molecule View" quality setValue 1
"Molecule View" capDrawStyle setValue 1
"Molecule View" options setValue 0 0
"Molecule View" options setToggleVisible 0 1
"Molecule View" options setValue 1 0
"Molecule View" options setToggleVisible 1 1
"Molecule View" options setValue 2 0
"Molecule View" options setToggleVisible 2 1
"Molecule View" atomRadius setMinMax 0 2
"Molecule View" atomRadius setButtons 0
"Molecule View" atomRadius setEditButton 1
"Molecule View" atomRadius setIncrement 0.133333
"Molecule View" atomRadius setValue 0.1
"Molecule View" atomRadius setSubMinMax 0 2
"Molecule View" bondRadius setMinMax 0 0.5
"Molecule View" bondRadius setButtons 0
"Molecule View" bondRadius setEditButton 1
"Molecule View" bondRadius setIncrement 0.0333333
"Molecule View" bondRadius setValue 0.3
"Molecule View" bondRadius setSubMinMax 0 0.5
"Molecule View" lineWidth setMinMax 1 10
"Molecule View" lineWidth setButtons 1
"Molecule View" lineWidth setEditButton 1
"Molecule View" lineWidth setIncrement 1
"Molecule View" lineWidth setValue 2
"Molecule View" lineWidth setSubMinMax 1 10
"Molecule View" complexity setMinMax 0 1
"Molecule View" complexity setButtons 0
"Molecule View" complexity setEditButton 1
"Molecule View" complexity setIncrement 0.1
"Molecule View" complexity setValue 0.4
"Molecule View" complexity setSubMinMax 0 1
"Molecule View" twistFactor setMinMax 0.5 2
"Molecule View" twistFactor setButtons 0
"Molecule View" twistFactor setEditButton 1
"Molecule View" twistFactor setIncrement 0.1
"Molecule View" twistFactor setValue 1
"Molecule View" twistFactor setSubMinMax 0.5 2
"Molecule View" colorScheme setOptValue 0 0
"Molecule View" colorScheme setOptValue 1 0
"Molecule View" highlightSize setMinMax 1 10
"Molecule View" highlightSize setButtons 1
"Molecule View" highlightSize setEditButton 1
"Molecule View" highlightSize setIncrement 1
"Molecule View" highlightSize setValue 4
"Molecule View" highlightSize setSubMinMax 1 10
"Molecule View" filterOptions setValue 0 0
"Molecule View" filterOptions setToggleVisible 0 1
"Molecule View" filterOptions setValue 1 0
"Molecule View" filterOptions setToggleVisible 1 1
"Molecule View" fire
"Molecule View" continuousColormap setLocalMinMax 0.000000 0.000000
"Molecule View" discreteColormap setLocalMinMax 1.000000 16.000000
"Molecule View" fire
"Molecule View" setViewerMask 16382
"Molecule View" setPickable 1

set hideNewModules 0
create HxSecStructure "Secondary Structure View 2"
"Secondary Structure View 2" setIconPosition 438 112
"Secondary Structure View 2" setVar "CustomHelp" {HxSecStructure}
"Secondary Structure View 2" setVar "CustomXML" {HxSecStructure_config.xml}
"Secondary Structure View 2" data connect "6s61-chainA.amf"
"Secondary Structure View 2" discreteColormapBB disconnect
"Secondary Structure View 2" discreteColormapBB setDefaultColor 0.78 0.78 0.78
"Secondary Structure View 2" discreteColormapBB setDefaultAlpha 1.000000
"Secondary Structure View 2" discreteColormapBB activateLocalRange 1
"Secondary Structure View 2" discreteColormapBB setLocalMinMax 0.000000 0.000000
"Secondary Structure View 2" discreteColormapBB enableAlpha 1
"Secondary Structure View 2" discreteColormapBB enableAlphaToggle 1
"Secondary Structure View 2" discreteColormapBB setAutoAdjustRangeMode 1
"Secondary Structure View 2" discreteColormapBB setColorbarMinMax 0 120
"Secondary Structure View 2" continuousColormapBB disconnect
"Secondary Structure View 2" continuousColormapBB setDefaultColor 0.78 0.78 0.78
"Secondary Structure View 2" continuousColormapBB setDefaultAlpha 1.000000
"Secondary Structure View 2" continuousColormapBB activateLocalRange 1
"Secondary Structure View 2" continuousColormapBB setLocalMinMax 1.000000 172.000000
"Secondary Structure View 2" continuousColormapBB enableAlpha 1
"Secondary Structure View 2" continuousColormapBB enableAlphaToggle 1
"Secondary Structure View 2" continuousColormapBB setAutoAdjustRangeMode 1
"Secondary Structure View 2" continuousColormapBB setColorbarMinMax 0 172
"Secondary Structure View 2" discreteColormapH disconnect
"Secondary Structure View 2" discreteColormapH setDefaultColor 0.3 0.3 0.9
"Secondary Structure View 2" discreteColormapH setDefaultAlpha 1.000000
"Secondary Structure View 2" discreteColormapH activateLocalRange 1
"Secondary Structure View 2" discreteColormapH setLocalMinMax 0.000000 0.000000
"Secondary Structure View 2" discreteColormapH enableAlpha 1
"Secondary Structure View 2" discreteColormapH enableAlphaToggle 1
"Secondary Structure View 2" discreteColormapH setAutoAdjustRangeMode 1
"Secondary Structure View 2" discreteColormapH setColorbarMinMax 0 120
"Secondary Structure View 2" continuousColormapH disconnect
"Secondary Structure View 2" continuousColormapH setDefaultColor 0.3 0.3 0.9
"Secondary Structure View 2" continuousColormapH setDefaultAlpha 1.000000
"Secondary Structure View 2" continuousColormapH activateLocalRange 1
"Secondary Structure View 2" continuousColormapH setLocalMinMax 1.000000 172.000000
"Secondary Structure View 2" continuousColormapH enableAlpha 1
"Secondary Structure View 2" continuousColormapH enableAlphaToggle 1
"Secondary Structure View 2" continuousColormapH setAutoAdjustRangeMode 1
"Secondary Structure View 2" continuousColormapH setColorbarMinMax 0 172
"Secondary Structure View 2" discreteColormapS disconnect
"Secondary Structure View 2" discreteColormapS setDefaultColor 0.9 0.2 0.2
"Secondary Structure View 2" discreteColormapS setDefaultAlpha 1.000000
"Secondary Structure View 2" discreteColormapS activateLocalRange 1
"Secondary Structure View 2" discreteColormapS setLocalMinMax 0.000000 0.000000
"Secondary Structure View 2" discreteColormapS enableAlpha 1
"Secondary Structure View 2" discreteColormapS enableAlphaToggle 1
"Secondary Structure View 2" discreteColormapS setAutoAdjustRangeMode 1
"Secondary Structure View 2" discreteColormapS setColorbarMinMax 0 120
"Secondary Structure View 2" continuousColormapS disconnect
"Secondary Structure View 2" continuousColormapS setDefaultColor 0.9 0.2 0.2
"Secondary Structure View 2" continuousColormapS setDefaultAlpha 1.000000
"Secondary Structure View 2" continuousColormapS activateLocalRange 1
"Secondary Structure View 2" continuousColormapS setLocalMinMax 1.000000 172.000000
"Secondary Structure View 2" continuousColormapS enableAlpha 1
"Secondary Structure View 2" continuousColormapS enableAlphaToggle 1
"Secondary Structure View 2" continuousColormapS setAutoAdjustRangeMode 1
"Secondary Structure View 2" continuousColormapS setColorbarMinMax 0 172
"Secondary Structure View 2" discreteColormapT disconnect
"Secondary Structure View 2" discreteColormapT setDefaultColor 0.4 0.4 0.4
"Secondary Structure View 2" discreteColormapT setDefaultAlpha 1.000000
"Secondary Structure View 2" discreteColormapT activateLocalRange 1
"Secondary Structure View 2" discreteColormapT setLocalMinMax 0.000000 0.000000
"Secondary Structure View 2" discreteColormapT enableAlpha 1
"Secondary Structure View 2" discreteColormapT enableAlphaToggle 1
"Secondary Structure View 2" discreteColormapT setAutoAdjustRangeMode 1
"Secondary Structure View 2" discreteColormapT setColorbarMinMax 0 120
"Secondary Structure View 2" continuousColormapT disconnect
"Secondary Structure View 2" continuousColormapT setDefaultColor 0.4 0.4 0.4
"Secondary Structure View 2" continuousColormapT setDefaultAlpha 1.000000
"Secondary Structure View 2" continuousColormapT activateLocalRange 1
"Secondary Structure View 2" continuousColormapT setLocalMinMax 1.000000 172.000000
"Secondary Structure View 2" continuousColormapT enableAlpha 1
"Secondary Structure View 2" continuousColormapT enableAlphaToggle 1
"Secondary Structure View 2" continuousColormapT setAutoAdjustRangeMode 1
"Secondary Structure View 2" continuousColormapT setColorbarMinMax 0 172
"Secondary Structure View 2" fire
"Secondary Structure View 2" selectAtoms zab HIJMPLPPHPBENAAKAAAAFHPKFKLE
"Secondary Structure View 2" generalShape setValue 3
"Secondary Structure View 2" threadsLineWidth setMinMax 1 3
"Secondary Structure View 2" threadsLineWidth setButtons 1
"Secondary Structure View 2" threadsLineWidth setEditButton 1
"Secondary Structure View 2" threadsLineWidth setIncrement 1
"Secondary Structure View 2" threadsLineWidth setValue 1
"Secondary Structure View 2" threadsLineWidth setSubMinMax 1 3
"Secondary Structure View 2" options setValue 0
"Secondary Structure View 2" helixShape setValue 1
"Secondary Structure View 2" sheetShape setValue 1
"Secondary Structure View 2" backboneWidth setMinMax 0.100000001490116 5
"Secondary Structure View 2" backboneWidth setButtons 0
"Secondary Structure View 2" backboneWidth setEditButton 1
"Secondary Structure View 2" backboneWidth setIncrement 0.326667
"Secondary Structure View 2" backboneWidth setValue 0.5
"Secondary Structure View 2" backboneWidth setSubMinMax 0.100000001490116 5
"Secondary Structure View 2" helixWidth setMinMax 0.5 5
"Secondary Structure View 2" helixWidth setButtons 0
"Secondary Structure View 2" helixWidth setEditButton 1
"Secondary Structure View 2" helixWidth setIncrement 0.3
"Secondary Structure View 2" helixWidth setValue 3.5
"Secondary Structure View 2" helixWidth setSubMinMax 0.5 5
"Secondary Structure View 2" sheetWidth setMinMax 0.5 5
"Secondary Structure View 2" sheetWidth setButtons 0
"Secondary Structure View 2" sheetWidth setEditButton 1
"Secondary Structure View 2" sheetWidth setIncrement 0.3
"Secondary Structure View 2" sheetWidth setValue 4.5
"Secondary Structure View 2" sheetWidth setSubMinMax 0.5 5
"Secondary Structure View 2" turnWidth setMinMax 0.5 5
"Secondary Structure View 2" turnWidth setButtons 0
"Secondary Structure View 2" turnWidth setEditButton 1
"Secondary Structure View 2" turnWidth setIncrement 0.3
"Secondary Structure View 2" turnWidth setValue 1
"Secondary Structure View 2" turnWidth setSubMinMax 0.5 5
"Secondary Structure View 2" backboneEccentricity setMinMax 0 1
"Secondary Structure View 2" backboneEccentricity setButtons 0
"Secondary Structure View 2" backboneEccentricity setEditButton 1
"Secondary Structure View 2" backboneEccentricity setIncrement 0.1
"Secondary Structure View 2" backboneEccentricity setValue 0
"Secondary Structure View 2" backboneEccentricity setSubMinMax 0 1
"Secondary Structure View 2" helixEccentricity setMinMax 0 1
"Secondary Structure View 2" helixEccentricity setButtons 0
"Secondary Structure View 2" helixEccentricity setEditButton 1
"Secondary Structure View 2" helixEccentricity setIncrement 0.1
"Secondary Structure View 2" helixEccentricity setValue 0.7
"Secondary Structure View 2" helixEccentricity setSubMinMax 0 1
"Secondary Structure View 2" sheetEccentricity setMinMax 0 1
"Secondary Structure View 2" sheetEccentricity setButtons 0
"Secondary Structure View 2" sheetEccentricity setEditButton 1
"Secondary Structure View 2" sheetEccentricity setIncrement 0.1
"Secondary Structure View 2" sheetEccentricity setValue 0.8
"Secondary Structure View 2" sheetEccentricity setSubMinMax 0 1
"Secondary Structure View 2" turnEccentricity setMinMax 0 1
"Secondary Structure View 2" turnEccentricity setButtons 0
"Secondary Structure View 2" turnEccentricity setEditButton 1
"Secondary Structure View 2" turnEccentricity setIncrement 0.1
"Secondary Structure View 2" turnEccentricity setValue 0
"Secondary Structure View 2" turnEccentricity setSubMinMax 0 1
"Secondary Structure View 2" backboneTubeRadius setMinMax 0.100000001490116 0.5
"Secondary Structure View 2" backboneTubeRadius setButtons 0
"Secondary Structure View 2" backboneTubeRadius setEditButton 1
"Secondary Structure View 2" backboneTubeRadius setIncrement 0.0266667
"Secondary Structure View 2" backboneTubeRadius setValue 0.2
"Secondary Structure View 2" backboneTubeRadius setSubMinMax 0.100000001490116 0.5
"Secondary Structure View 2" colorSchemeBB setOptValue 0 0
"Secondary Structure View 2" colorSchemeBB setOptValue 1 0
"Secondary Structure View 2" helixTubeRadius setMinMax 0.100000001490116 2
"Secondary Structure View 2" helixTubeRadius setButtons 0
"Secondary Structure View 2" helixTubeRadius setEditButton 1
"Secondary Structure View 2" helixTubeRadius setIncrement 0.126667
"Secondary Structure View 2" helixTubeRadius setValue 0.5
"Secondary Structure View 2" helixTubeRadius setSubMinMax 0.100000001490116 2
"Secondary Structure View 2" helixCylinderRadius setMinMax 1 4
"Secondary Structure View 2" helixCylinderRadius setButtons 0
"Secondary Structure View 2" helixCylinderRadius setEditButton 1
"Secondary Structure View 2" helixCylinderRadius setIncrement 0.2
"Secondary Structure View 2" helixCylinderRadius setValue 2.1
"Secondary Structure View 2" helixCylinderRadius setSubMinMax 1 4
"Secondary Structure View 2" helixRibbonWidth setMinMax 0.5 7
"Secondary Structure View 2" helixRibbonWidth setButtons 0
"Secondary Structure View 2" helixRibbonWidth setEditButton 1
"Secondary Structure View 2" helixRibbonWidth setIncrement 0.433333
"Secondary Structure View 2" helixRibbonWidth setValue 3
"Secondary Structure View 2" helixRibbonWidth setSubMinMax 0.5 7
"Secondary Structure View 2" colorSchemeH setOptValue 0 0
"Secondary Structure View 2" colorSchemeH setOptValue 1 0
"Secondary Structure View 2" sheetArrowWidth setMinMax 0.5 5
"Secondary Structure View 2" sheetArrowWidth setButtons 0
"Secondary Structure View 2" sheetArrowWidth setEditButton 1
"Secondary Structure View 2" sheetArrowWidth setIncrement 0.3
"Secondary Structure View 2" sheetArrowWidth setValue 1.5
"Secondary Structure View 2" sheetArrowWidth setSubMinMax 0.5 5
"Secondary Structure View 2" sheetArrowHeight setMinMax 0 0.5
"Secondary Structure View 2" sheetArrowHeight setButtons 0
"Secondary Structure View 2" sheetArrowHeight setEditButton 1
"Secondary Structure View 2" sheetArrowHeight setIncrement 0.0333333
"Secondary Structure View 2" sheetArrowHeight setValue 0.2
"Secondary Structure View 2" sheetArrowHeight setSubMinMax 0 0.5
"Secondary Structure View 2" sheetArrowOptions setValue 0 1
"Secondary Structure View 2" sheetArrowOptions setToggleVisible 0 1
"Secondary Structure View 2" sheetArrowOptions setValue 1 1
"Secondary Structure View 2" sheetArrowOptions setToggleVisible 1 1
"Secondary Structure View 2" sheetRadius setMinMax 0.100000001490116 2
"Secondary Structure View 2" sheetRadius setButtons 0
"Secondary Structure View 2" sheetRadius setEditButton 1
"Secondary Structure View 2" sheetRadius setIncrement 0.126667
"Secondary Structure View 2" sheetRadius setValue 0.3
"Secondary Structure View 2" sheetRadius setSubMinMax 0.100000001490116 2
"Secondary Structure View 2" colorSchemeS setOptValue 0 0
"Secondary Structure View 2" colorSchemeS setOptValue 1 0
"Secondary Structure View 2" turnTubeRadius setMinMax 0.100000001490116 2
"Secondary Structure View 2" turnTubeRadius setButtons 0
"Secondary Structure View 2" turnTubeRadius setEditButton 1
"Secondary Structure View 2" turnTubeRadius setIncrement 0.126667
"Secondary Structure View 2" turnTubeRadius setValue 0.3
"Secondary Structure View 2" turnTubeRadius setSubMinMax 0.100000001490116 2
"Secondary Structure View 2" colorSchemeT setOptValue 0 0
"Secondary Structure View 2" colorSchemeT setOptValue 1 0
"Secondary Structure View 2" structures setValue 0 1
"Secondary Structure View 2" structures setToggleVisible 0 1
"Secondary Structure View 2" structures setValue 1 1
"Secondary Structure View 2" structures setToggleVisible 1 1
"Secondary Structure View 2" structures setValue 2 1
"Secondary Structure View 2" structures setToggleVisible 2 1
"Secondary Structure View 2" structures setValue 3 1
"Secondary Structure View 2" structures setToggleVisible 3 1
"Secondary Structure View 2" complexity setMinMax 0 1
"Secondary Structure View 2" complexity setButtons 0
"Secondary Structure View 2" complexity setEditButton 1
"Secondary Structure View 2" complexity setIncrement 0.1
"Secondary Structure View 2" complexity setValue 0.5
"Secondary Structure View 2" complexity setSubMinMax 0 1
"Secondary Structure View 2" highlightingColor setColor 0 0.949 0.847 0.09
"Secondary Structure View 2" filterOptions setValue 0 0
"Secondary Structure View 2" filterOptions setToggleVisible 0 1
"Secondary Structure View 2" filterOptions setValue 1 0
"Secondary Structure View 2" filterOptions setToggleVisible 1 1
"Secondary Structure View 2" fire
"Secondary Structure View 2" discreteColormapBB setLocalMinMax 0.000000 0.000000
"Secondary Structure View 2" continuousColormapBB setLocalMinMax 1.000000 172.000000
"Secondary Structure View 2" discreteColormapH setLocalMinMax 0.000000 0.000000
"Secondary Structure View 2" continuousColormapH setLocalMinMax 1.000000 172.000000
"Secondary Structure View 2" discreteColormapS setLocalMinMax 0.000000 0.000000
"Secondary Structure View 2" continuousColormapS setLocalMinMax 1.000000 172.000000
"Secondary Structure View 2" discreteColormapT setLocalMinMax 0.000000 0.000000
"Secondary Structure View 2" continuousColormapT setLocalMinMax 1.000000 172.000000
"Secondary Structure View 2" fire
"Secondary Structure View 2" setViewerMask 16382
"Secondary Structure View 2" setPickable 1

set hideNewModules 0

viewer 0 setCameraOrientation 0.999234 -0.00408877 -0.0389269 3.13716
viewer 0 setCameraPosition 81.9261 97.0499 -112.74
viewer 0 setCameraFocalDistance 211.806
viewer 0 setCameraNearDistance 145.673
viewer 0 setCameraFarDistance 278.078
viewer 0 setCameraType perspective
viewer 0 setCameraHeightAngle 44.9023
viewer 0 setAutoRedraw 1
viewer 0 redraw

correlationPanel closeTabs
correlationPanel setTabName 0 "Correlation 1"
correlationPanel 0 setLogScalingOnAxis 0 0
correlationPanel 0 setLogScalingOnAxis 1 0

histogramPanel closeTabs
histogramPanel setTabName 0 "Histogram 1"
histogramPanel 0 setLogScalingOnAxis 0 0
histogramPanel 0 setLogScalingOnAxis 1 1

