# Avizo Project 201940
# Avizo
# Generated by Avizo 2019.4
remove -all
remove "temperature.icol" "grayScale.am" "volrenWhite.am" "labels.am" "TEM_partical_artifact-affect.am" "TEM_partical_artifact-affect_raw-data.am" "TEM_partical_artifact-affect.filtered" "TEM_partical_artifact-affect.thresholded" "TEM_partical_artifact-affect2.thresholded" "Result" "Result.separate" "Ortho Slice" "Tcl Command Module" "Volume Rendering Settings" "Volume Rendering" "Structure Enhancement Filter" "Interactive Thresholding" "Interactive Thresholding 2" "Arithmetic" "Separate Objects" "Volume Rendering Settings 2" "Volume Rendering 2" "Bounding Box"

# Create viewers
viewer setVertical 1

viewer 0 setTransparencyType 6
viewer 0 setAutoRedraw 0
viewer 0 show
viewer 1 setTransparencyType 6
viewer 1 setAutoRedraw 0
viewer 1 show
mainWindow show

_units setUnitsManagementMode 1
_units setDisplayCoordinatesUnit nm
_units setWorkingCoordinatesUnit nm

set hideNewModules 1
[ load ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/temperature.icol.am ] setLabel "temperature.icol.am"
"temperature.icol.am" setIconPosition 0 0
"temperature.icol.am" setNoRemoveAll 1
"temperature.icol.am" fire
"temperature.icol.am" setMinMax 38 44
"temperature.icol.am" flags setValue 1
"temperature.icol.am" shift setMinMax -1 1
"temperature.icol.am" shift setButtons 0
"temperature.icol.am" shift setEditButton 1
"temperature.icol.am" shift setIncrement 0.133333
"temperature.icol.am" shift setValue 0
"temperature.icol.am" shift setSubMinMax -1 1
"temperature.icol.am" scale setMinMax 0 1
"temperature.icol.am" scale setButtons 0
"temperature.icol.am" scale setEditButton 1
"temperature.icol.am" scale setIncrement 0.1
"temperature.icol.am" scale setValue 1
"temperature.icol.am" scale setSubMinMax 0 1
"temperature.icol.am" fire
"temperature.icol.am" setViewerMask 16383

set hideNewModules 1
[ load ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/grayScale.am ] setLabel "grayScale.am"
"grayScale.am" setIconPosition 0 0
"grayScale.am" setNoRemoveAll 1
"grayScale.am" setVar "CustomHelp" {HxColormap256}
"grayScale.am" fire
"grayScale.am" setMinMax 0 255
"grayScale.am" flags setValue 1
"grayScale.am" shift setMinMax -1 1
"grayScale.am" shift setButtons 0
"grayScale.am" shift setEditButton 1
"grayScale.am" shift setIncrement 0.133333
"grayScale.am" shift setValue 0
"grayScale.am" shift setSubMinMax -1 1
"grayScale.am" scale setMinMax 0 1
"grayScale.am" scale setButtons 0
"grayScale.am" scale setEditButton 1
"grayScale.am" scale setIncrement 0.1
"grayScale.am" scale setValue 1
"grayScale.am" scale setSubMinMax 0 1
"grayScale.am" fire
"grayScale.am" setViewerMask 16383

set hideNewModules 1
[ load ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/volrenWhite.am ] setLabel "volrenWhite.am"
"volrenWhite.am" setIconPosition 0 0
"volrenWhite.am" setNoRemoveAll 1
"volrenWhite.am" setVar "CustomHelp" {HxColormap256}
"volrenWhite.am" fire
"volrenWhite.am" setMinMax 0 255
"volrenWhite.am" flags setValue 1
"volrenWhite.am" shift setMinMax -1 1
"volrenWhite.am" shift setButtons 0
"volrenWhite.am" shift setEditButton 1
"volrenWhite.am" shift setIncrement 0.133333
"volrenWhite.am" shift setValue 0
"volrenWhite.am" shift setSubMinMax -1 1
"volrenWhite.am" scale setMinMax 0 1
"volrenWhite.am" scale setButtons 0
"volrenWhite.am" scale setEditButton 1
"volrenWhite.am" scale setIncrement 0.1
"volrenWhite.am" scale setValue 1
"volrenWhite.am" scale setSubMinMax 0 1
"volrenWhite.am" fire
"volrenWhite.am" setViewerMask 16383

set hideNewModules 1
[ load ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/labels.am ] setLabel "labels.am"
"labels.am" setIconPosition 0 0
"labels.am" setNoRemoveAll 1
"labels.am" setVar "CustomHelp" {HxColormap256}
"labels.am" fire
"labels.am" setMinMax 1 8
"labels.am" flags setValue 1
"labels.am" shift setMinMax -1 1
"labels.am" shift setButtons 0
"labels.am" shift setEditButton 1
"labels.am" shift setIncrement 0.133333
"labels.am" shift setValue 0
"labels.am" shift setSubMinMax -1 1
"labels.am" scale setMinMax 0 1
"labels.am" scale setButtons 0
"labels.am" scale setEditButton 1
"labels.am" scale setIncrement 0.1
"labels.am" scale setValue 1
"labels.am" scale setSubMinMax 0 1
"labels.am" fire
"labels.am" setViewerMask 16383

set hideNewModules 0
[ load -unit nm ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/TEM_partical_artifact-affect.am ] setLabel "TEM_partical_artifact-affect.am"
"TEM_partical_artifact-affect.am" setIconPosition 22 13
"TEM_partical_artifact-affect.am" sharedColormap disconnect
"TEM_partical_artifact-affect.am" sharedColormap setDefaultColor 0.8 0.8 0.8
"TEM_partical_artifact-affect.am" sharedColormap setDefaultAlpha 0.500000
"TEM_partical_artifact-affect.am" sharedColormap activateLocalRange 1
"TEM_partical_artifact-affect.am" sharedColormap setLocalMinMax 0.000000 1.000000
"TEM_partical_artifact-affect.am" sharedColormap enableAlpha 1
"TEM_partical_artifact-affect.am" sharedColormap enableAlphaToggle 1
"TEM_partical_artifact-affect.am" sharedColormap setAutoAdjustRangeMode 1
"TEM_partical_artifact-affect.am" fire
"TEM_partical_artifact-affect.am" fire
"TEM_partical_artifact-affect.am" setViewerMask 16383

set hideNewModules 0
[ load -unit nm ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/TEM_partical_artifact-affect_raw-data.am ] setLabel "TEM_partical_artifact-affect_raw-data.am"
"TEM_partical_artifact-affect_raw-data.am" setIconPosition 21 -21
"TEM_partical_artifact-affect_raw-data.am" sharedColormap disconnect
"TEM_partical_artifact-affect_raw-data.am" sharedColormap setDefaultColor 0.8 0.8 0.8
"TEM_partical_artifact-affect_raw-data.am" sharedColormap setDefaultAlpha 0.500000
"TEM_partical_artifact-affect_raw-data.am" sharedColormap activateLocalRange 1
"TEM_partical_artifact-affect_raw-data.am" sharedColormap setLocalMinMax 0.000000 1.000000
"TEM_partical_artifact-affect_raw-data.am" sharedColormap enableAlpha 1
"TEM_partical_artifact-affect_raw-data.am" sharedColormap enableAlphaToggle 1
"TEM_partical_artifact-affect_raw-data.am" sharedColormap setAutoAdjustRangeMode 1
"TEM_partical_artifact-affect_raw-data.am" sharedColormap setColorbarMinMax 0 57044
"TEM_partical_artifact-affect_raw-data.am" fire
"TEM_partical_artifact-affect_raw-data.am" fire
"TEM_partical_artifact-affect_raw-data.am" setViewerMask 16383
"TEM_partical_artifact-affect_raw-data.am" select

set hideNewModules 0
create HxOrthoSlice "Ortho Slice"
"Ortho Slice" setIconPosition 355 -9
"Ortho Slice" setVar "CustomHelp" {HxOrthoSlice}
"Ortho Slice" data connect "TEM_partical_artifact-affect.am"
"Ortho Slice" fire
"Ortho Slice" sliceOrientation setValue 0
"Ortho Slice" fire
"Ortho Slice" origin  setBoundingBox -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038
"Ortho Slice" origin  setImmediateMode 0
"Ortho Slice" origin  setOrtho 0
"Ortho Slice" origin  showDragger 0
"Ortho Slice" origin  showPoints 0
"Ortho Slice" origin  setPointScale 1
"Ortho Slice" origin  showOptionButton 1
"Ortho Slice" origin  setNumPoints 1 1 1
"Ortho Slice" origin  setCoord 0 181.274 -46.5088 186.523
"Ortho Slice" normal  setBoundingBox -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038 -3.40282e+038 3.40282e+038
"Ortho Slice" normal  setImmediateMode 0
"Ortho Slice" normal  setOrtho 0
"Ortho Slice" normal  showDragger 0
"Ortho Slice" normal  showPoints 0
"Ortho Slice" normal  setPointScale 1
"Ortho Slice" normal  showOptionButton 1
"Ortho Slice" normal  setNumPoints 1 1 1
"Ortho Slice" normal  setCoord 0 0 0 1
"Ortho Slice" options setValue 0 1
"Ortho Slice" options setToggleVisible 0 1
"Ortho Slice" options setValue 1 0
"Ortho Slice" options setToggleVisible 1 1
"Ortho Slice" options setValue 2 0
"Ortho Slice" options setToggleVisible 2 1
"Ortho Slice" mappingType setIndex 0 0
"Ortho Slice" contrastLimit setMinMax 0 -16777216 16777216
"Ortho Slice" contrastLimit setValue 0 7
"Ortho Slice" colormap connect "grayScale.am"
"Ortho Slice" colormap setDefaultColor 1 0.8 0.5
"Ortho Slice" colormap setDefaultAlpha 1.000000
"Ortho Slice" colormap activateLocalRange 1
"Ortho Slice" colormap setLocalMinMax 7207.000000 57044.000000
"Ortho Slice" colormap enableAlpha 1
"Ortho Slice" colormap enableAlphaToggle 1
"Ortho Slice" colormap setAutoAdjustRangeMode 1
"Ortho Slice" sliceNumber setMinMax 0 299
"Ortho Slice" sliceNumber setButtons 1
"Ortho Slice" sliceNumber setEditButton 1
"Ortho Slice" sliceNumber setIncrement 1
"Ortho Slice" sliceNumber setValue 100
"Ortho Slice" sliceNumber setSubMinMax 0 299
"Ortho Slice" transparency setValue 0
"Ortho Slice" alpha setMinMax 0 -16777216 16777216
"Ortho Slice" alpha setValue 0 0
"Ortho Slice" alpha setMinMax 1 -16777216 16777216
"Ortho Slice" alpha setValue 1 255
"Ortho Slice" frameSettings setState {item 0 1 item 2 1 color 3 1 0.5 0 }
"Ortho Slice" embossingOnOff setValue 0
"Ortho Slice" depth setMinMax -60 60
"Ortho Slice" depth setButtons 0
"Ortho Slice" depth setEditButton 1
"Ortho Slice" depth setIncrement 8
"Ortho Slice" depth setValue 2
"Ortho Slice" depth setSubMinMax -60 60
"Ortho Slice" fire

"Ortho Slice" fire
"Ortho Slice" setViewerMask 16380
"Ortho Slice" setShadowStyle 3
"Ortho Slice" setPickable 1

set hideNewModules 0
create HxScriptObjectText "Tcl Command Module"
"Tcl Command Module" setIconPosition 329 28
"Tcl Command Module" setVar "CustomHelp" {HxScriptObjectText}
"Tcl Command Module" fire
"Tcl Command Module" scriptText setState {[$this input source] setRotation 1 0 0 90
[$this input source] applyTransform}
"Tcl Command Module" input connect "TEM_partical_artifact-affect.am"
"Tcl Command Module" applyTransformToResult 1
"Tcl Command Module" fire
"Tcl Command Module" setViewerMask 16383
"Tcl Command Module" setPickable 1

set hideNewModules 0
create HxVolumeRenderingSettings "Volume Rendering Settings"
"Volume Rendering Settings" setViewerMask 0
"Volume Rendering Settings" setIconPosition 641 9
"Volume Rendering Settings" setVar "CustomHelp" {HxVolumeRenderingSettings}
set hideNewModules 0

"Volume Rendering Settings" data connect "TEM_partical_artifact-affect.am"
"Volume Rendering Settings" fire
"Volume Rendering Settings" rendering setValue 1
"Volume Rendering Settings" fire
"Volume Rendering Settings" interpolationAdvanced setValue 1
"Volume Rendering Settings" composition setValue 0
"Volume Rendering Settings" moveLowResolutionScale setMinMax 1 10
"Volume Rendering Settings" moveLowResolutionScale setButtons 1
"Volume Rendering Settings" moveLowResolutionScale setEditButton 1
"Volume Rendering Settings" moveLowResolutionScale setIncrement 1
"Volume Rendering Settings" moveLowResolutionScale setValue 2
"Volume Rendering Settings" moveLowResolutionScale setSubMinMax 1 10
"Volume Rendering Settings" samplingQuality setMinMax 0 2
"Volume Rendering Settings" samplingQuality setButtons 0
"Volume Rendering Settings" samplingQuality setEditButton 1
"Volume Rendering Settings" samplingQuality setIncrement 0.133333
"Volume Rendering Settings" samplingQuality setValue 0.5
"Volume Rendering Settings" samplingQuality setSubMinMax 0 2
"Volume Rendering Settings" opacityThreshold setMinMax 0 1
"Volume Rendering Settings" opacityThreshold setButtons 0
"Volume Rendering Settings" opacityThreshold setEditButton 1
"Volume Rendering Settings" opacityThreshold setIncrement 0.05
"Volume Rendering Settings" opacityThreshold setValue 0
"Volume Rendering Settings" opacityThreshold setSubMinMax 0 1
"Volume Rendering Settings" optimizations setValue 0 0
"Volume Rendering Settings" optimizations setToggleVisible 0 1
"Volume Rendering Settings" optimizations setValue 1 1
"Volume Rendering Settings" optimizations setToggleVisible 1 1
"Volume Rendering Settings" optimizations setValue 2 0
"Volume Rendering Settings" optimizations setToggleVisible 2 1
"Volume Rendering Settings" quality setValue 1
"Volume Rendering Settings" fire
"Volume Rendering Settings" artifactsReduction setValue 0 0
"Volume Rendering Settings" artifactsReduction setToggleVisible 0 1
"Volume Rendering Settings" artifactsReduction setValue 1 0
"Volume Rendering Settings" artifactsReduction setToggleVisible 1 1
"Volume Rendering Settings" lighting setState {item 0 1 item 1 0 }
"Volume Rendering Settings" gradient setState {item 0 1 item 2 9.99999974737875e-05 }
"Volume Rendering Settings" effects setValue 0 0
"Volume Rendering Settings" effects setToggleVisible 0 1
"Volume Rendering Settings" effects setValue 1 0
"Volume Rendering Settings" effects setToggleVisible 1 1
"Volume Rendering Settings" effects setValue 2 0
"Volume Rendering Settings" effects setToggleVisible 2 1
"Volume Rendering Settings" effects setValue 3 0
"Volume Rendering Settings" effects setToggleVisible 3 1
"Volume Rendering Settings" edgeEnhancement setMinMax 0 -3.40282346638529e+038 3.40282346638529e+038
"Volume Rendering Settings" edgeEnhancement setValue 0 9.99999974737875e-005
"Volume Rendering Settings" edge2D setState {item 1 0.100000001490116 item 3 0.100000001490116 item 5 1 }
"Volume Rendering Settings" boundaryOpacity setMinMax 0 -3.40282346638529e+038 3.40282346638529e+038
"Volume Rendering Settings" boundaryOpacity setValue 0 2.5
"Volume Rendering Settings" boundaryOpacity setMinMax 1 -3.40282346638529e+038 3.40282346638529e+038
"Volume Rendering Settings" boundaryOpacity setValue 1 2.5
"Volume Rendering Settings" material setIndex 0 4
"Volume Rendering Settings" lightingStyle setIndex 0 1
"Volume Rendering Settings" toneMapping setIndex 0 0
"Volume Rendering Settings" depthOfField setValue 0
"Volume Rendering Settings" blurFactor setMinMax 0.00999999977648258 1
"Volume Rendering Settings" blurFactor setButtons 0
"Volume Rendering Settings" blurFactor setEditButton 1
"Volume Rendering Settings" blurFactor setIncrement 0.066
"Volume Rendering Settings" blurFactor setValue 0.01
"Volume Rendering Settings" blurFactor setSubMinMax 0.00999999977648258 1
"Volume Rendering Settings" specularColor setMinMax 0 1
"Volume Rendering Settings" specularColor setButtons 0
"Volume Rendering Settings" specularColor setEditButton 1
"Volume Rendering Settings" specularColor setIncrement 0.1
"Volume Rendering Settings" specularColor setValue 0.4
"Volume Rendering Settings" specularColor setSubMinMax 0 1
"Volume Rendering Settings" shininess setMinMax 0 1
"Volume Rendering Settings" shininess setButtons 0
"Volume Rendering Settings" shininess setEditButton 1
"Volume Rendering Settings" shininess setIncrement 0.1
"Volume Rendering Settings" shininess setValue 0.4
"Volume Rendering Settings" shininess setSubMinMax 0 1
"Volume Rendering Settings" fire
"Volume Rendering Settings" setViewerMask 16382
"Volume Rendering Settings" setPickable 1

set hideNewModules 0
create HxVolumeRender2 "Volume Rendering"
"Volume Rendering" setIconPosition 641 35
"Volume Rendering" setVar "CustomHelp" {HxVolumeRender2}
"Volume Rendering" data connect "TEM_partical_artifact-affect.am"
"Volume Rendering" volumeRenderingSettings connect "Volume Rendering Settings"
"Volume Rendering" fire
"Volume Rendering" colormap connect "volrenWhite.am"
"Volume Rendering" colormap setDefaultColor 1 1 1
"Volume Rendering" colormap setDefaultAlpha 0.500000
"Volume Rendering" colormap activateLocalRange 1
"Volume Rendering" colormap setLocalMinMax 31257.000000 57044.000000
"Volume Rendering" colormap enableAlpha 1
"Volume Rendering" colormap enableAlphaToggle 1
"Volume Rendering" colormap setAutoAdjustRangeMode 1
"Volume Rendering" fire
"Volume Rendering" colormapLookup setValue 2
"Volume Rendering" gamma setMinMax 0.100000001490116 8
"Volume Rendering" gamma setButtons 0
"Volume Rendering" gamma setEditButton 1
"Volume Rendering" gamma setIncrement 0.526667
"Volume Rendering" gamma setValue 3
"Volume Rendering" gamma setSubMinMax 0.100000001490116 8
"Volume Rendering" alphaScale setMinMax 0 1
"Volume Rendering" alphaScale setButtons 0
"Volume Rendering" alphaScale setEditButton 1
"Volume Rendering" alphaScale setIncrement 0.1
"Volume Rendering" alphaScale setValue 1
"Volume Rendering" alphaScale setSubMinMax 0 1
"Volume Rendering" channelSelector setState {2 }
"Volume Rendering" fire
"Volume Rendering" setViewerMask 16383
"Volume Rendering" setPickable 1

set hideNewModules 0
create structureenhancementfilter "Structure Enhancement Filter"
"Structure Enhancement Filter" setIconPosition 327 70
"Structure Enhancement Filter" setVar "CustomHelp" {structureenhancementfilter.html}
"Structure Enhancement Filter" interpretation setValue 1
"Structure Enhancement Filter" outputLocation setIndex 0 0
"Structure Enhancement Filter" inputImage connect "TEM_partical_artifact-affect.am"
"Structure Enhancement Filter" tensorType setIndex 0 0
"Structure Enhancement Filter" standardDeviationMinMax setMinMax 0 0 3.40282346638529e+038
"Structure Enhancement Filter" standardDeviationMinMax setValue 0 1
"Structure Enhancement Filter" standardDeviationMinMax setMinMax 1 0 3.40282346638529e+038
"Structure Enhancement Filter" standardDeviationMinMax setValue 1 4
"Structure Enhancement Filter" standardDeviationStep setMinMax 0 0 3.40282346638529e+038
"Structure Enhancement Filter" standardDeviationStep setValue 0 1
"Structure Enhancement Filter" contrast setIndex 0 0
"Structure Enhancement Filter" structureType setIndex 0 1
"Structure Enhancement Filter" applyTransformToResult 1
"Structure Enhancement Filter" fire
"Structure Enhancement Filter" setViewerMask 16383
"Structure Enhancement Filter" setPickable 1

set hideNewModules 0
[ load -unit nm ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/TEM_partical_artifact-affect.filtered ] setLabel "TEM_partical_artifact-affect.filtered"
"TEM_partical_artifact-affect.filtered" setIconPosition 20 70
"TEM_partical_artifact-affect.filtered" master connect "Structure Enhancement Filter" "ImgOut" 0
"TEM_partical_artifact-affect.filtered" sharedColormap disconnect
"TEM_partical_artifact-affect.filtered" sharedColormap setDefaultColor 0.8 0.8 0.8
"TEM_partical_artifact-affect.filtered" sharedColormap setDefaultAlpha 0.500000
"TEM_partical_artifact-affect.filtered" sharedColormap activateLocalRange 1
"TEM_partical_artifact-affect.filtered" sharedColormap setLocalMinMax 0.000000 1.000000
"TEM_partical_artifact-affect.filtered" sharedColormap enableAlpha 1
"TEM_partical_artifact-affect.filtered" sharedColormap enableAlphaToggle 1
"TEM_partical_artifact-affect.filtered" sharedColormap setAutoAdjustRangeMode 1
"TEM_partical_artifact-affect.filtered" fire
"TEM_partical_artifact-affect.filtered" fire
"TEM_partical_artifact-affect.filtered" setViewerMask 16383

set hideNewModules 0
create HxInteractiveThreshold "Interactive Thresholding"
"Interactive Thresholding" setViewerMask 0
"Interactive Thresholding" setIconPosition 329 115
"Interactive Thresholding" setVar "CustomHelp" {HxInteractiveThreshold}
set hideNewModules 0

"Interactive Thresholding" data connect "TEM_partical_artifact-affect.filtered"
"Interactive Thresholding" inputColorMap connect "grayScale.am"
"Interactive Thresholding" inputColorMap setDefaultColor 1 0.8 0.5
"Interactive Thresholding" inputColorMap setDefaultAlpha 0.500000
"Interactive Thresholding" inputColorMap activateLocalRange 1
"Interactive Thresholding" inputColorMap setLocalMinMax 0.000000 0.025726
"Interactive Thresholding" inputColorMap enableAlpha 1
"Interactive Thresholding" inputColorMap enableAlphaToggle 1
"Interactive Thresholding" inputColorMap setAutoAdjustRangeMode 1
"Interactive Thresholding" fire
"Interactive Thresholding" preview setValue 0 1
"Interactive Thresholding" preview setToggleVisible 0 1
"Interactive Thresholding" preview setValue 1 0
"Interactive Thresholding" preview setToggleVisible 1 1
"Interactive Thresholding" orientation setValue 0
"Interactive Thresholding" sliceNumber setMinMax 0 299
"Interactive Thresholding" sliceNumber setButtons 1
"Interactive Thresholding" sliceNumber setEditButton 1
"Interactive Thresholding" sliceNumber setIncrement 1
"Interactive Thresholding" sliceNumber setValue 150
"Interactive Thresholding" sliceNumber setSubMinMax 0 299
"Interactive Thresholding" rendering setValue 1
"Interactive Thresholding" intensityRange setMinMax -1 1
"Interactive Thresholding" intensityRange setValues 0.025 0.220937
"Interactive Thresholding" intensityRange setButtons 0
"Interactive Thresholding" intensityRange setEditButton 1
"Interactive Thresholding" intensityRange setIncrement 1
"Interactive Thresholding" intensityRange setSubMinMax 0 0
"Interactive Thresholding" colorMask setColor 0 0 0 1
"Interactive Thresholding" applyTransformToResult 1
"Interactive Thresholding" fire
"Interactive Thresholding" setViewerMask 16380
"Interactive Thresholding" setPickable 1

set hideNewModules 0
[ load -unit nm ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/TEM_partical_artifact-affect.thresholded ] setLabel "TEM_partical_artifact-affect.thresholded"
"TEM_partical_artifact-affect.thresholded" setIconPosition 20 115
"TEM_partical_artifact-affect.thresholded" master connect "Interactive Thresholding" "result" 0
"TEM_partical_artifact-affect.thresholded" sharedColormap connect "labels.am"
"TEM_partical_artifact-affect.thresholded" sharedColormap setDefaultColor 0.8 0.8 0.8
"TEM_partical_artifact-affect.thresholded" sharedColormap setDefaultAlpha 0.500000
"TEM_partical_artifact-affect.thresholded" sharedColormap activateLocalRange 1
"TEM_partical_artifact-affect.thresholded" sharedColormap setLocalMinMax 1.000000 8.000000
"TEM_partical_artifact-affect.thresholded" sharedColormap enableAlpha 1
"TEM_partical_artifact-affect.thresholded" sharedColormap enableAlphaToggle 1
"TEM_partical_artifact-affect.thresholded" sharedColormap setAutoAdjustRangeMode 1
"TEM_partical_artifact-affect.thresholded" fire
"TEM_partical_artifact-affect.thresholded" primary setIndex 0 0
"TEM_partical_artifact-affect.thresholded" fire
"TEM_partical_artifact-affect.thresholded" setViewerMask 16383

set hideNewModules 0
create HxInteractiveThreshold "Interactive Thresholding 2"
"Interactive Thresholding 2" setViewerMask 0
"Interactive Thresholding 2" setIconPosition 571 79
"Interactive Thresholding 2" setVar "CustomHelp" {HxInteractiveThreshold}
set hideNewModules 0

"Interactive Thresholding 2" data connect "TEM_partical_artifact-affect.am"
"Interactive Thresholding 2" inputColorMap connect "grayScale.am"
"Interactive Thresholding 2" inputColorMap setDefaultColor 1 0.8 0.5
"Interactive Thresholding 2" inputColorMap setDefaultAlpha 0.500000
"Interactive Thresholding 2" inputColorMap activateLocalRange 1
"Interactive Thresholding 2" inputColorMap setLocalMinMax 7207.000000 57044.000000
"Interactive Thresholding 2" inputColorMap enableAlpha 1
"Interactive Thresholding 2" inputColorMap enableAlphaToggle 1
"Interactive Thresholding 2" inputColorMap setAutoAdjustRangeMode 1
"Interactive Thresholding 2" fire
"Interactive Thresholding 2" preview setValue 0 1
"Interactive Thresholding 2" preview setToggleVisible 0 1
"Interactive Thresholding 2" preview setValue 1 0
"Interactive Thresholding 2" preview setToggleVisible 1 1
"Interactive Thresholding 2" orientation setValue 0
"Interactive Thresholding 2" sliceNumber setMinMax 0 299
"Interactive Thresholding 2" sliceNumber setButtons 1
"Interactive Thresholding 2" sliceNumber setEditButton 1
"Interactive Thresholding 2" sliceNumber setIncrement 1
"Interactive Thresholding 2" sliceNumber setValue 150
"Interactive Thresholding 2" sliceNumber setSubMinMax 0 299
"Interactive Thresholding 2" rendering setValue 1
"Interactive Thresholding 2" intensityRange setMinMax 0 65535
"Interactive Thresholding 2" intensityRange setValues 44749 57044
"Interactive Thresholding 2" intensityRange setButtons 0
"Interactive Thresholding 2" intensityRange setEditButton 1
"Interactive Thresholding 2" intensityRange setIncrement 4369
"Interactive Thresholding 2" intensityRange setSubMinMax 0 0
"Interactive Thresholding 2" colorMask setColor 0 0 0 1
"Interactive Thresholding 2" applyTransformToResult 1
"Interactive Thresholding 2" fire
"Interactive Thresholding 2" setViewerMask 16380
"Interactive Thresholding 2" setPickable 1

set hideNewModules 0
[ load -unit nm ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/TEM_partical_artifact-affect2.thresholded ] setLabel "TEM_partical_artifact-affect2.thresholded"
"TEM_partical_artifact-affect2.thresholded" setIconPosition 537 120
"TEM_partical_artifact-affect2.thresholded" master connect "Interactive Thresholding 2" "result" 0
"TEM_partical_artifact-affect2.thresholded" sharedColormap connect "labels.am"
"TEM_partical_artifact-affect2.thresholded" sharedColormap setDefaultColor 0.8 0.8 0.8
"TEM_partical_artifact-affect2.thresholded" sharedColormap setDefaultAlpha 0.500000
"TEM_partical_artifact-affect2.thresholded" sharedColormap activateLocalRange 1
"TEM_partical_artifact-affect2.thresholded" sharedColormap setLocalMinMax 1.000000 8.000000
"TEM_partical_artifact-affect2.thresholded" sharedColormap enableAlpha 1
"TEM_partical_artifact-affect2.thresholded" sharedColormap enableAlphaToggle 1
"TEM_partical_artifact-affect2.thresholded" sharedColormap setAutoAdjustRangeMode 1
"TEM_partical_artifact-affect2.thresholded" fire
"TEM_partical_artifact-affect2.thresholded" primary setIndex 0 0
"TEM_partical_artifact-affect2.thresholded" fire
"TEM_partical_artifact-affect2.thresholded" setViewerMask 16383

set hideNewModules 0
create HxArithmetic "Arithmetic"
"Arithmetic" setIconPosition 332 150
"Arithmetic" setVar "CustomHelp" {HxArithmetic}
"Arithmetic" inputA connect "TEM_partical_artifact-affect.thresholded"
"Arithmetic" inputB connect "TEM_partical_artifact-affect2.thresholded"
"Arithmetic" fire
"Arithmetic" resultChannels setIndex 0 0
"Arithmetic" nValues setMinMax 0 -16777216 16777216
"Arithmetic" nValues setValue 0 1
"Arithmetic" expr0 setState {a|b}
"Arithmetic" resultType setValue 0
"Arithmetic" resultLocation setValue 0
"Arithmetic" resolution setMinMax 0 1 100000
"Arithmetic" resolution setValue 0 64
"Arithmetic" resolution setMinMax 1 1 100000
"Arithmetic" resolution setValue 1 64
"Arithmetic" resolution setMinMax 2 1 100000
"Arithmetic" resolution setValue 2 64
"Arithmetic" minBox setMinMax 0 -3.40282346638529e+038 3.40282346638529e+038
"Arithmetic" minBox setValue 0 -1
"Arithmetic" minBox setMinMax 1 -3.40282346638529e+038 3.40282346638529e+038
"Arithmetic" minBox setValue 1 -1
"Arithmetic" minBox setMinMax 2 -3.40282346638529e+038 3.40282346638529e+038
"Arithmetic" minBox setValue 2 -1
"Arithmetic" maxBox setMinMax 0 -3.40282346638529e+038 3.40282346638529e+038
"Arithmetic" maxBox setValue 0 1
"Arithmetic" maxBox setMinMax 1 -3.40282346638529e+038 3.40282346638529e+038
"Arithmetic" maxBox setValue 1 1
"Arithmetic" maxBox setMinMax 2 -3.40282346638529e+038 3.40282346638529e+038
"Arithmetic" maxBox setValue 2 1
"Arithmetic" options setValue 0 0
"Arithmetic" options setToggleVisible 0 1
"Arithmetic" applyTransformToResult 1
"Arithmetic" fire
"Arithmetic" setViewerMask 16383
"Arithmetic" setPickable 1

set hideNewModules 0
[ load -unit nm ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/Result ] setLabel "Result"
"Result" setIconPosition 20 150
"Result" master connect "Arithmetic" "result" 0
"Result" sharedColormap connect "labels.am"
"Result" sharedColormap setDefaultColor 0.8 0.8 0.8
"Result" sharedColormap setDefaultAlpha 0.500000
"Result" sharedColormap activateLocalRange 1
"Result" sharedColormap setLocalMinMax 1.000000 8.000000
"Result" sharedColormap enableAlpha 1
"Result" sharedColormap enableAlphaToggle 1
"Result" sharedColormap setAutoAdjustRangeMode 1
"Result" fire
"Result" primary setIndex 0 0
"Result" fire
"Result" setViewerMask 16383

set hideNewModules 0
create binseparate "Separate Objects"
"Separate Objects" setIconPosition 331 187
"Separate Objects" setVar "CustomHelp" {binseparate}
"Separate Objects" Method setState {type Chamfer - Conservative}
"Separate Objects" interpretation setValue 0
"Separate Objects" outputLocation setIndex 0 0
"Separate Objects" neighborhood setValue 2
"Separate Objects" inputBinaryImage connect "Result"
"Separate Objects" markerExtent setMinMax 0 0 2147483648
"Separate Objects" markerExtent setValue 0 1
"Separate Objects" outputType setIndex 0 4
"Separate Objects" algorithmMode setIndex 0 0
"Separate Objects" applyTransformToResult 1
"Separate Objects" fire
"Separate Objects" setViewerMask 16383
"Separate Objects" setPickable 1

set hideNewModules 0
[ load -unit nm ${SCRIPTDIR}/TEM_partical_artifact_2020Q1_DL-files/Result.separate ] setLabel "Result.separate"
"Result.separate" setIconPosition 20 187
"Result.separate" master connect "Separate Objects" "ImgOutBinOrLab" 0
"Result.separate" sharedColormap connect "labels.am"
"Result.separate" sharedColormap setDefaultColor 0.8 0.8 0.8
"Result.separate" sharedColormap setDefaultAlpha 0.500000
"Result.separate" sharedColormap activateLocalRange 1
"Result.separate" sharedColormap setLocalMinMax 1.000000 8.000000
"Result.separate" sharedColormap enableAlpha 1
"Result.separate" sharedColormap enableAlphaToggle 1
"Result.separate" sharedColormap setAutoAdjustRangeMode 1
"Result.separate" fire
"Result.separate" primary setIndex 0 0
"Result.separate" fire
"Result.separate" setViewerMask 16383

set hideNewModules 0
create HxVolumeRenderingSettings "Volume Rendering Settings 2"
"Volume Rendering Settings 2" setViewerMask 0
"Volume Rendering Settings 2" setIconPosition 630 160
"Volume Rendering Settings 2" setVar "CustomHelp" {HxVolumeRenderingSettings}
set hideNewModules 0

"Volume Rendering Settings 2" data connect "Result.separate"
"Volume Rendering Settings 2" fire
"Volume Rendering Settings 2" rendering setValue 1
"Volume Rendering Settings 2" fire
"Volume Rendering Settings 2" interpolationAdvanced setValue 0
"Volume Rendering Settings 2" composition setValue 0
"Volume Rendering Settings 2" moveLowResolutionScale setMinMax 1 10
"Volume Rendering Settings 2" moveLowResolutionScale setButtons 1
"Volume Rendering Settings 2" moveLowResolutionScale setEditButton 1
"Volume Rendering Settings 2" moveLowResolutionScale setIncrement 1
"Volume Rendering Settings 2" moveLowResolutionScale setValue 2
"Volume Rendering Settings 2" moveLowResolutionScale setSubMinMax 1 10
"Volume Rendering Settings 2" samplingQuality setMinMax 0 2
"Volume Rendering Settings 2" samplingQuality setButtons 0
"Volume Rendering Settings 2" samplingQuality setEditButton 1
"Volume Rendering Settings 2" samplingQuality setIncrement 0.133333
"Volume Rendering Settings 2" samplingQuality setValue 1
"Volume Rendering Settings 2" samplingQuality setSubMinMax 0 2
"Volume Rendering Settings 2" opacityThreshold setMinMax 0 1
"Volume Rendering Settings 2" opacityThreshold setButtons 0
"Volume Rendering Settings 2" opacityThreshold setEditButton 1
"Volume Rendering Settings 2" opacityThreshold setIncrement 0.05
"Volume Rendering Settings 2" opacityThreshold setValue 0
"Volume Rendering Settings 2" opacityThreshold setSubMinMax 0 1
"Volume Rendering Settings 2" optimizations setValue 0 0
"Volume Rendering Settings 2" optimizations setToggleVisible 0 1
"Volume Rendering Settings 2" optimizations setValue 1 1
"Volume Rendering Settings 2" optimizations setToggleVisible 1 1
"Volume Rendering Settings 2" optimizations setValue 2 0
"Volume Rendering Settings 2" optimizations setToggleVisible 2 1
"Volume Rendering Settings 2" quality setValue 3
"Volume Rendering Settings 2" fire
"Volume Rendering Settings 2" artifactsReduction setValue 0 0
"Volume Rendering Settings 2" artifactsReduction setToggleVisible 0 1
"Volume Rendering Settings 2" artifactsReduction setValue 1 0
"Volume Rendering Settings 2" artifactsReduction setToggleVisible 1 1
"Volume Rendering Settings 2" lighting setState {item 0 1 item 1 0 }
"Volume Rendering Settings 2" gradient setState {item 0 1 item 2 9.99999974737875e-05 }
"Volume Rendering Settings 2" effects setValue 0 0
"Volume Rendering Settings 2" effects setToggleVisible 0 1
"Volume Rendering Settings 2" effects setValue 1 0
"Volume Rendering Settings 2" effects setToggleVisible 1 1
"Volume Rendering Settings 2" effects setValue 2 0
"Volume Rendering Settings 2" effects setToggleVisible 2 1
"Volume Rendering Settings 2" effects setValue 3 0
"Volume Rendering Settings 2" effects setToggleVisible 3 1
"Volume Rendering Settings 2" edgeEnhancement setMinMax 0 -3.40282346638529e+038 3.40282346638529e+038
"Volume Rendering Settings 2" edgeEnhancement setValue 0 9.99999974737875e-005
"Volume Rendering Settings 2" edge2D setState {item 1 0.100000001490116 item 3 0.100000001490116 item 5 1 }
"Volume Rendering Settings 2" boundaryOpacity setMinMax 0 -3.40282346638529e+038 3.40282346638529e+038
"Volume Rendering Settings 2" boundaryOpacity setValue 0 2.5
"Volume Rendering Settings 2" boundaryOpacity setMinMax 1 -3.40282346638529e+038 3.40282346638529e+038
"Volume Rendering Settings 2" boundaryOpacity setValue 1 2.5
"Volume Rendering Settings 2" material setIndex 0 4
"Volume Rendering Settings 2" lightingStyle setIndex 0 1
"Volume Rendering Settings 2" toneMapping setIndex 0 0
"Volume Rendering Settings 2" depthOfField setValue 0
"Volume Rendering Settings 2" blurFactor setMinMax 0.00999999977648258 1
"Volume Rendering Settings 2" blurFactor setButtons 0
"Volume Rendering Settings 2" blurFactor setEditButton 1
"Volume Rendering Settings 2" blurFactor setIncrement 0.066
"Volume Rendering Settings 2" blurFactor setValue 0.01
"Volume Rendering Settings 2" blurFactor setSubMinMax 0.00999999977648258 1
"Volume Rendering Settings 2" specularColor setMinMax 0 1
"Volume Rendering Settings 2" specularColor setButtons 0
"Volume Rendering Settings 2" specularColor setEditButton 1
"Volume Rendering Settings 2" specularColor setIncrement 0.1
"Volume Rendering Settings 2" specularColor setValue 0.4
"Volume Rendering Settings 2" specularColor setSubMinMax 0 1
"Volume Rendering Settings 2" shininess setMinMax 0 1
"Volume Rendering Settings 2" shininess setButtons 0
"Volume Rendering Settings 2" shininess setEditButton 1
"Volume Rendering Settings 2" shininess setIncrement 0.1
"Volume Rendering Settings 2" shininess setValue 0.4
"Volume Rendering Settings 2" shininess setSubMinMax 0 1
"Volume Rendering Settings 2" fire
"Volume Rendering Settings 2" setViewerMask 16383
"Volume Rendering Settings 2" setPickable 1

set hideNewModules 0
create HxVolumeRender2 "Volume Rendering 2"
"Volume Rendering 2" setIconPosition 630 186
"Volume Rendering 2" setVar "CustomHelp" {HxVolumeRender2}
"Volume Rendering 2" data connect "Result.separate"
"Volume Rendering 2" volumeRenderingSettings connect "Volume Rendering Settings 2"
"Volume Rendering 2" fire
"Volume Rendering 2" colormap connect "labels.am"
"Volume Rendering 2" colormap setDefaultColor 1 1 1
"Volume Rendering 2" colormap setDefaultAlpha 0.500000
"Volume Rendering 2" colormap activateLocalRange 1
"Volume Rendering 2" colormap setLocalMinMax 1.000000 8.000000
"Volume Rendering 2" colormap enableAlpha 1
"Volume Rendering 2" colormap enableAlphaToggle 1
"Volume Rendering 2" colormap setAutoAdjustRangeMode 1
"Volume Rendering 2" fire
"Volume Rendering 2" colormapLookup setValue 2
"Volume Rendering 2" gamma setMinMax 0.100000001490116 8
"Volume Rendering 2" gamma setButtons 0
"Volume Rendering 2" gamma setEditButton 1
"Volume Rendering 2" gamma setIncrement 0.526667
"Volume Rendering 2" gamma setValue 3
"Volume Rendering 2" gamma setSubMinMax 0.100000001490116 8
"Volume Rendering 2" alphaScale setMinMax 0 1
"Volume Rendering 2" alphaScale setButtons 0
"Volume Rendering 2" alphaScale setEditButton 1
"Volume Rendering 2" alphaScale setIncrement 0.1
"Volume Rendering 2" alphaScale setValue 1
"Volume Rendering 2" alphaScale setSubMinMax 0 1
"Volume Rendering 2" channelSelector setState {2 }
"Volume Rendering 2" fire
"Volume Rendering 2" setViewerMask 16383
"Volume Rendering 2" setPickable 1

set hideNewModules 0
create HxBoundingBox "Bounding Box"
"Bounding Box" setIconPosition 498 -8
"Bounding Box" setVar "CustomHelp" {HxBoundingBox}
"Bounding Box" data connect "TEM_partical_artifact-affect.am"
"Bounding Box" fire
"Bounding Box" options setState {item 0 0 color 1 1 0.5 0 item 3 0 }
"Bounding Box" lineWidth setMinMax 1 10
"Bounding Box" lineWidth setButtons 1
"Bounding Box" lineWidth setEditButton 1
"Bounding Box" lineWidth setIncrement 1
"Bounding Box" lineWidth setValue 1
"Bounding Box" lineWidth setSubMinMax 1 10
"Bounding Box" font setState {name: "Arial Unicode MS" size: 12 buttonText: Select bold: 0 italic: 0 color: 0.8 0.8 0.8}
"Bounding Box" fire
"Bounding Box" setViewerMask 16383
"Bounding Box" setPickable 1

set hideNewModules 0

viewer 0 setCameraOrientation 0.999921 -0.00325108 -0.0121536 2.32331
viewer 0 setCameraPosition 178.111 -147.639 103.939
viewer 0 setCameraFocalDistance 138.562
viewer 0 setCameraNearDistance 94.7922
viewer 0 setCameraFarDistance 182.42
viewer 0 setCameraType perspective
viewer 0 setCameraHeightAngle 44.9023
viewer 0 linkViewer 1
viewer 0 setAutoRedraw 1
viewer 0 redraw

viewer 1 setCameraOrientation 0.999921 -0.00325108 -0.0121536 2.32331
viewer 1 setCameraPosition 178.111 -147.639 103.939
viewer 1 setCameraFocalDistance 138.562
viewer 1 setCameraNearDistance 94.7922
viewer 1 setCameraFarDistance 182.42
viewer 1 setCameraType perspective
viewer 1 setCameraHeightAngle 44.9023
viewer 1 linkViewer 0
viewer 1 setAutoRedraw 1
viewer 1 redraw

"Interactive Thresholding" sliceNumber interconnect "Interactive Thresholding_HxOrthoSlice" sliceNumber
"Interactive Thresholding 2" sliceNumber interconnect "Interactive Thresholding 2_HxOrthoSlice" sliceNumber
correlationPanel closeTabs
correlationPanel setTabName 0 "Correlation 1"
correlationPanel 0 setLogScalingOnAxis 0 0
correlationPanel 0 setLogScalingOnAxis 1 0

histogramPanel closeTabs
histogramPanel setTabName 0 "Histogram 1"
histogramPanel 0 setLogScalingOnAxis 0 0
histogramPanel 0 setLogScalingOnAxis 1 1

theObjectPool setSelectionOrder TEM_partical_artifact-affect_raw-data.am
