# Avizo Project 202512
# Avizo3D
# Generated by Avizo3D 2025.1.2
remove -all
remove "grayScale.am" "physics.icol" "salbutamol0007.tif" "Ortho Slice" "Auto Crop Banner" "Ortho Slice(2)"

# Create viewers
viewer setVertical 1

viewer 0 setAutoRedraw 0
viewer 0 show
viewer 1 setAutoRedraw 0
viewer 1 show
mainWindow show

_units setUnitsManagementMode 1
_units setDisplayCoordinatesUnit nm
_units setWorkingCoordinatesUnit nm
set hideNewModules 1
[ load ${AMIRA_ROOT}/data/colormaps/grayScale.am ] setLabel "grayScale.am"
"grayScale.am" setIconPosition 0 0
"grayScale.am" setNoRemoveAll 1
"grayScale.am" setVar "CustomHelp" {HxColormap256}
"grayScale.am" fire
"grayScale.am" setMinMax 0 255
"grayScale.am" flags setValue 1
"grayScale.am" shift setMinMax -1 1
"grayScale.am" shift setButtons 0
"grayScale.am" shift setEditButton 1
"grayScale.am" shift setIncrement 0.133333
"grayScale.am" shift setValue 0
"grayScale.am" shift setSubMinMax -1 1
"grayScale.am" scale setMinMax 0 1
"grayScale.am" scale setButtons 0
"grayScale.am" scale setEditButton 1
"grayScale.am" scale setIncrement 0.1
"grayScale.am" scale setValue 1
"grayScale.am" scale setSubMinMax 0 1
"grayScale.am" fire
"grayScale.am" setViewerMask 16383

set hideNewModules 1
[ load ${AMIRA_ROOT}/data/colormaps/physics.icol ] setLabel "physics.icol"
"physics.icol" setIconPosition 0 0
"physics.icol" setNoRemoveAll 1
"physics.icol" fire
"physics.icol" setMinMax 0 0.4375
"physics.icol" flags setValue 1
"physics.icol" shift setMinMax -1 1
"physics.icol" shift setButtons 0
"physics.icol" shift setEditButton 1
"physics.icol" shift setIncrement 0.133333
"physics.icol" shift setValue 0
"physics.icol" shift setSubMinMax -1 1
"physics.icol" scale setMinMax 0 1
"physics.icol" scale setButtons 0
"physics.icol" scale setEditButton 1
"physics.icol" scale setIncrement 0.1
"physics.icol" scale setValue 1
"physics.icol" scale setSubMinMax 0 1
"physics.icol" fire
"physics.icol" setViewerMask 16383

set hideNewModules 0
[ load -unit nm -tif +box 0 2047 0 2175 0 1 +mode 100 ${SCRIPTDIR}/data/salbutamol0007.tif] setLabel "salbutamol0007.tif"
"salbutamol0007.tif" setIconPosition 20 10
"salbutamol0007.tif" setVar "CustomXML" {salbutamol0007.tif_config.xml}
"salbutamol0007.tif" sharedColormap disconnect
"salbutamol0007.tif" sharedColormap setDefaultColor 0.8 0.8 0.8
"salbutamol0007.tif" sharedColormap setDefaultAlpha 0.500000
"salbutamol0007.tif" sharedColormap activateLocalRange 1
"salbutamol0007.tif" sharedColormap setLocalMinMax 0.000000 1.000000
"salbutamol0007.tif" sharedColormap enableAlpha 1
"salbutamol0007.tif" sharedColormap enableAlphaToggle 1
"salbutamol0007.tif" sharedColormap setAutoAdjustRangeMode 1
"salbutamol0007.tif" sharedColormap setColorbarMinMax 0 255
"salbutamol0007.tif" fire
"salbutamol0007.tif" fire
"salbutamol0007.tif" setViewerMask 16383

set hideNewModules 0
create HxOrthoSlice "Ortho Slice"
"Ortho Slice" setIconPosition 491 10
"Ortho Slice" setVar "CustomHelp" {HxOrthoSlice}
"Ortho Slice" setVar "CustomXML" {HxOrthoSlice_config.xml}
"Ortho Slice" data connect "salbutamol0007.tif"
"Ortho Slice" fire
"Ortho Slice" sliceOrientation setValue 0
"Ortho Slice" fire
"Ortho Slice" origin  setBoundingBox -3.40282e+38 3.40282e+38 -3.40282e+38 3.40282e+38 -3.40282e+38 3.40282e+38
"Ortho Slice" origin  setImmediateMode 0
"Ortho Slice" origin  setOrtho 0
"Ortho Slice" origin  showDragger 0
"Ortho Slice" origin  showPoints 0
"Ortho Slice" origin  setPointScale 1
"Ortho Slice" origin  showOptionButton 1
"Ortho Slice" origin  setNumPoints 1 1 1
"Ortho Slice" origin  setCoord 0 1023.5 1087.5 0.5
"Ortho Slice" normal  setBoundingBox -3.40282e+38 3.40282e+38 -3.40282e+38 3.40282e+38 -3.40282e+38 3.40282e+38
"Ortho Slice" normal  setImmediateMode 0
"Ortho Slice" normal  setOrtho 0
"Ortho Slice" normal  showDragger 0
"Ortho Slice" normal  showPoints 0
"Ortho Slice" normal  setPointScale 1
"Ortho Slice" normal  showOptionButton 1
"Ortho Slice" normal  setNumPoints 1 1 1
"Ortho Slice" normal  setCoord 0 0 0 1
"Ortho Slice" options setValue 0 1
"Ortho Slice" options setToggleVisible 0 1
"Ortho Slice" options setValue 1 0
"Ortho Slice" options setToggleVisible 1 1
"Ortho Slice" options setValue 2 0
"Ortho Slice" options setToggleVisible 2 1
"Ortho Slice" mappingType setIndex 0 0
"Ortho Slice" contrastLimit setMinMax 0 -16777216 16777216
"Ortho Slice" contrastLimit setValue 0 7
"Ortho Slice" colormap connect "grayScale.am"
"Ortho Slice" colormap setDefaultColor 1 0.8 0.5
"Ortho Slice" colormap setDefaultAlpha 1.000000
"Ortho Slice" colormap activateLocalRange 1
"Ortho Slice" colormap setLocalMinMax 0.000000 255.000000
"Ortho Slice" colormap enableAlpha 1
"Ortho Slice" colormap enableAlphaToggle 1
"Ortho Slice" colormap setAutoAdjustRangeMode 1
"Ortho Slice" colormap setColorbarMinMax 0 255
"Ortho Slice" sliceNumber setMinMax 0 0
"Ortho Slice" sliceNumber setButtons 1
"Ortho Slice" sliceNumber setEditButton 1
"Ortho Slice" sliceNumber setIncrement 1
"Ortho Slice" sliceNumber setValue 0
"Ortho Slice" sliceNumber setSubMinMax 0 0
"Ortho Slice" transparency setValue 0
"Ortho Slice" alpha setMinMax 0 -16777216 16777216
"Ortho Slice" alpha setValue 0 0
"Ortho Slice" alpha setMinMax 1 -16777216 16777216
"Ortho Slice" alpha setValue 1 255
"Ortho Slice" frameSettings setState {item 0 1 item 2 1 color 3 1 0.5 0 }
"Ortho Slice" embossingOnOff setValue 0
"Ortho Slice" depth setMinMax -60 60
"Ortho Slice" depth setButtons 0
"Ortho Slice" depth setEditButton 1
"Ortho Slice" depth setIncrement 8
"Ortho Slice" depth setValue 2
"Ortho Slice" depth setSubMinMax -60 60
"Ortho Slice" fire

"Ortho Slice" fire
"Ortho Slice" setViewerMask 16381
"Ortho Slice" setShadowStyle 3
"Ortho Slice" setPickable 1

set hideNewModules 0
[create "HxPythonScriptObject"] setLabel "Auto Crop Banner"
"Auto Crop Banner" filename setState "${SCRIPTDIR}/local/share/python_script_objects/AutoCropBanner.pyscro"
"Auto Crop Banner" startStop hit 0 1
"Auto Crop Banner" fire
"Auto Crop Banner" filename hide
"Auto Crop Banner" startStop hide
"Auto Crop Banner" setIconPosition 160 45
"Auto Crop Banner" setVar "CustomHelp" {AutoCropBanner.html}
"Auto Crop Banner" setVar "CustomXML" {AutoCropBanner_config.xml}
"Auto Crop Banner" data connect "salbutamol0007.tif"
"Auto Crop Banner" apply setValue 0
"Auto Crop Banner" fire
"Auto Crop Banner" filename setState "${SCRIPTDIR}/local/share/python_script_objects/AutoCropBanner.pyscro"
"Auto Crop Banner" heightForSampling setMinMax 0 0 200
"Auto Crop Banner" heightForSampling setValue 0 40
"Auto Crop Banner" borderSize setMinMax 0 0 50
"Auto Crop Banner" borderSize setValue 0 0
"Auto Crop Banner" applyTransformToResult 1
"Auto Crop Banner" fire
"Auto Crop Banner" setViewerMask 16383
"Auto Crop Banner" setPickable 1

set hideNewModules 0
set imagecropped ["Auto Crop Banner" getResult ]
$imagecropped setVar "CustomHelp" {HxUniformScalarField3}
$imagecropped setVar "CustomXML" {HxUniformScalarField3_config.xml}
$imagecropped master connect "Auto Crop Banner" "result" 0
$imagecropped sharedColormap disconnect
$imagecropped sharedColormap setDefaultColor 0.8 0.8 0.8
$imagecropped sharedColormap setDefaultAlpha 0.500000
$imagecropped sharedColormap activateLocalRange 1
$imagecropped sharedColormap setLocalMinMax 0.000000 1.000000
$imagecropped sharedColormap enableAlpha 1
$imagecropped sharedColormap enableAlphaToggle 1
$imagecropped sharedColormap setAutoAdjustRangeMode 1
$imagecropped sharedColormap setColorbarMinMax 0 255
$imagecropped fire
$imagecropped setViewerMask 16383

set hideNewModules 0
create HxOrthoSlice "Ortho Slice(2)"
"Ortho Slice(2)" setIconPosition 478 80
"Ortho Slice(2)" setVar "CustomHelp" {HxOrthoSlice}
"Ortho Slice(2)" setVar "CustomXML" {HxOrthoSlice_config.xml}
"Ortho Slice(2)" data connect $imagecropped
"Ortho Slice(2)" fire
"Ortho Slice(2)" sliceOrientation setValue 0
"Ortho Slice(2)" fire
"Ortho Slice(2)" origin  setBoundingBox -3.40282e+38 3.40282e+38 -3.40282e+38 3.40282e+38 -3.40282e+38 3.40282e+38
"Ortho Slice(2)" origin  setImmediateMode 0
"Ortho Slice(2)" origin  setOrtho 0
"Ortho Slice(2)" origin  showDragger 0
"Ortho Slice(2)" origin  showPoints 0
"Ortho Slice(2)" origin  setPointScale 1
"Ortho Slice(2)" origin  showOptionButton 1
"Ortho Slice(2)" origin  setNumPoints 1 1 1
"Ortho Slice(2)" origin  setCoord 0 1023.5 1023 0.5
"Ortho Slice(2)" normal  setBoundingBox -3.40282e+38 3.40282e+38 -3.40282e+38 3.40282e+38 -3.40282e+38 3.40282e+38
"Ortho Slice(2)" normal  setImmediateMode 0
"Ortho Slice(2)" normal  setOrtho 0
"Ortho Slice(2)" normal  showDragger 0
"Ortho Slice(2)" normal  showPoints 0
"Ortho Slice(2)" normal  setPointScale 1
"Ortho Slice(2)" normal  showOptionButton 1
"Ortho Slice(2)" normal  setNumPoints 1 1 1
"Ortho Slice(2)" normal  setCoord 0 0 0 1
"Ortho Slice(2)" options setValue 0 0
"Ortho Slice(2)" options setToggleVisible 0 1
"Ortho Slice(2)" options setValue 1 0
"Ortho Slice(2)" options setToggleVisible 1 1
"Ortho Slice(2)" options setValue 2 0
"Ortho Slice(2)" options setToggleVisible 2 1
"Ortho Slice(2)" mappingType setIndex 0 0
"Ortho Slice(2)" contrastLimit setMinMax 0 -16777216 16777216
"Ortho Slice(2)" contrastLimit setValue 0 7
"Ortho Slice(2)" colormap connect "grayScale.am"
"Ortho Slice(2)" colormap setDefaultColor 1 0.8 0.5
"Ortho Slice(2)" colormap setDefaultAlpha 1.000000
"Ortho Slice(2)" colormap activateLocalRange 1
"Ortho Slice(2)" colormap setLocalMinMax 0.000000 255.000000
"Ortho Slice(2)" colormap enableAlpha 1
"Ortho Slice(2)" colormap enableAlphaToggle 1
"Ortho Slice(2)" colormap setAutoAdjustRangeMode 1
"Ortho Slice(2)" colormap setColorbarMinMax 0 255
"Ortho Slice(2)" sliceNumber setMinMax 0 0
"Ortho Slice(2)" sliceNumber setButtons 1
"Ortho Slice(2)" sliceNumber setEditButton 1
"Ortho Slice(2)" sliceNumber setIncrement 1
"Ortho Slice(2)" sliceNumber setValue 0
"Ortho Slice(2)" sliceNumber setSubMinMax 0 0
"Ortho Slice(2)" transparency setValue 0
"Ortho Slice(2)" alpha setMinMax 0 -16777216 16777216
"Ortho Slice(2)" alpha setValue 0 0
"Ortho Slice(2)" alpha setMinMax 1 -16777216 16777216
"Ortho Slice(2)" alpha setValue 1 255
"Ortho Slice(2)" frameSettings setState {item 0 1 item 2 1 color 3 1 0.5 0 }
"Ortho Slice(2)" embossingOnOff setValue 0
"Ortho Slice(2)" depth setMinMax -60 60
"Ortho Slice(2)" depth setButtons 0
"Ortho Slice(2)" depth setEditButton 1
"Ortho Slice(2)" depth setIncrement 8
"Ortho Slice(2)" depth setValue 2
"Ortho Slice(2)" depth setSubMinMax -60 60
"Ortho Slice(2)" fire

"Ortho Slice(2)" fire
"Ortho Slice(2)" setViewerMask 16382
"Ortho Slice(2)" setShadowStyle 3
"Ortho Slice(2)" setPickable 1

set hideNewModules 0

viewer 0 setCameraOrientation 1 0 0 3.14159
viewer 0 setCameraPosition 1023.5 1087.5 -2544.17
viewer 0 setCameraFocalDistance 2544.67
viewer 0 setCameraNearDistance 2542.13
viewer 0 setCameraFarDistance 2547.22
viewer 0 setCameraType perspective
viewer 0 setCameraHeightAngle 44.9023
viewer 0 linkViewer 1
viewer 0 setAutoRedraw 1
viewer 0 redraw

viewer 1 setCameraOrientation 1 0 0 3.14159
viewer 1 setCameraPosition 1023.5 1087.5 -2544.17
viewer 1 setCameraFocalDistance 2544.67
viewer 1 setCameraNearDistance 2542.13
viewer 1 setCameraFarDistance 2547.22
viewer 1 setCameraType perspective
viewer 1 setCameraHeightAngle 44.9023
viewer 1 linkViewer 0
viewer 1 setAutoRedraw 1
viewer 1 redraw

thePreferences loadSettings { 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 }
correlationPanel closeTabs
correlationPanel setTabName 0 "Correlation 1"
correlationPanel 0 setLogScalingOnAxis 0 0
correlationPanel 0 setLogScalingOnAxis 1 0

histogramPanel closeTabs
histogramPanel setTabName 0 "Histogram 1"
histogramPanel 0 setLogScalingOnAxis 0 0
histogramPanel 0 setLogScalingOnAxis 1 1

