Amira Software Packages

Maximize your Amira Software experience with powerful packages and extensions

Thermo Scientific Amira Software is a versatile digital analytical lab for visualizing, manipulating, and understanding scientific and industrial imaging data from computed tomography, microscopy, and other imaging modalities. The software, empowered by extensions, offers advanced capabilities tailored to specific use cases. To dramatically boost your productivity and push the boundaries of your image analysis projects, explore the optional packages available below.

Packages

Amira 3D Pro Software

Enhanced image processing and quantification tools that enable you to perform image enhancement operations, create simplified and automated segmentation workflows, and perform extensive measurements and quantification.

Image of computer showing Amira Software user interface.

Amira Software for Cell Biology

Adds support for additional life science file formats. Can conveniently load 3D or 4D+ data from over 140 file formats including large multi-channel and time-series data.
 

Image of computer with Amira Software user interface.

Amira Software for Electron Microscopy Systems

Specifically tailored for electron microscopy, it includes EM Toolbox, ToGo Publisher, FIBStack Wizard, EMWorkflows, Thermo Scientific EM Readers, extended image format support, and features like Cylinder and Trace Correlation Lines.
 

Chlamydomonas rendering with Amira Software

Extensions

Xplore5D

  • Easily visualize, correlate, and process large multi-channel and time-series data in one environment.
  • Perform easy data conversion and compression with immediate visual feedback.
  • Quickly interact with and communicate on large 3D–4D+ data.

XNeuro

  • Analysis of diffusion-weighted MRI (DWI) to image the rate of water diffusion in tissues such as the brain or muscle.
  • Computation of apparent diffusion coefficient (ADC), fractional anisotropy (FA), and directionally encoded color (DEC) maps.
  • Support for diffusion tensor imaging (DTI) to localize and visualize fiber tracts in human and primate brains.

XFiber

  • Specific support for analyzing fibers, filaments, tunnels, and other networks of tree-like structures.
  • Automatic and semi-automatic tools for segmentation and analysis.
  • Interactive tools for segmentation and analysis.

XWind

  • Advanced post-processing of simulation data: flow data, thermal data, stress data.
  • Support for different applications including:
    • Computational fluid dynamics (CFD) and multi-physics
    • Mechanical and thermal engineering, manufacturing simulation, microstructural prediction, nonlinear structure and geotechnical engineering

XPore Network Modeling

  • Pore network modeling simulations of multiphase transport in porous materials:
    • Modules for generating various common network topologies
    • Pore and throat geometry models
    • Pore-scale physics models
    • Fluid property estimations
  • Large set of algorithms for running various simulations:
    • Drainage curves 
    • Gas diffusion 
    • Permeability

XDigital Volume Correlation

  • Computation of 3D full-field displacement and strain maps from volume images acquired during the deformation of an object.
  • Visualization and analysis of data to quantify deformation-induced microstructural changes:
    • Strain transfer in multiphase materials
    • Pore growth/coalescence related to fracture
    • Crack opening displacement (COD)

Try Amira Software

Optional packages for Amira Software

Amira Software, empowered by extensions, offers advanced capabilities for specific use cases. Check below for which optional package could dramatically boost your productivity and push the boundaries of your image analysis projects.

 

Packages / Extensions 3D 3D Pro 3D Cell Biology 3D EM systems Subscription program *
Data import, visualization, segmentation, analysis, animation (basic feature set)
Advanced segmentation, quantification, EM Toolbox, ToGo Publisher (extended feature set) Option
Extended image file format support (XBioFormats extension) Option Option
FIBStack Wizard, EMWorkflows, Thermo Scientific EM Readers, EM Toolbox, Cylinder and Trace Correlation Lines (EM-specific feature set) - - - -
Visualization, processing, and animation of large multi-channel and time-series data (Xplore5D extension) Option Option Option
Fibers, filament, and tubule segmentation and analysis (XFiber extension) Option Option Option
Advanced meshing and export to solvers (XWind extension) Option Option Option Option
Pore network characterization and modeling (XPNM extension) - Option Option Option
Digital volume correlation for material deformation measurements (XDVC extension) Option Option Option Option
Localization and visualization of fiber tracts using diffusion tensor imaging (XNeuro extension) Option Option Option Option

*only available for academic and governmental organizations

Additional resources

Amira Software Resource Center

Explore a targeted collection of application notes, case studies, articles, videos, and webinars covering a range of applications.

Customer Support and Service Center

Access support, services, news, releases and events. Some services require creating an account and logging in.

For Research Use Only. Not for use in diagnostic procedures.