Chip

Sample set

AGCC ARR/CEL

AGCC ARR/CEL/CHP

Human Gene 1.0 ST Array

Tissues

Download (131 MB)

Download (134 MB)

Human Gene 1.0 ST Array

Tissue mixture

Download (134 MB)

Download (136 MB)

Mouse Gene 1.0 ST Array

Tissues

Download (144 MB)

Download (147 MB)

Rat Gene 1.0 ST Array

Tissues

Download (144 MB)

Download (147 MB)

Description of downloads

  • AGCC ARR/CEL: These are zipped files converted with DEC from the GCOS Flat Files. These zip files contain richly annotated sample files (*.ARR) and AGCC-formatted probe cell intensity data (*.CEL). These data can be parsed with the Fusion SDK and are easily imported into GeneChip Command Console or Expression Console.

  • ARR/CEL/CHP: These are zipped study files from Expression Console v1.1. These zip files contain richly annotated sample files (*.ARR), AGCC formatted probe cell intensity data (*.CEL), and AGCC-formatted probe level summarization data (*.CHP). CHP files were generated using RMA and for exon arrays using only the core probes. These data can be parsed with the Fusion SDK and are easily imported into GeneChip Command Console Software or Expression Console.

Description of sample sets

This data set contains a collection of 11 tissues. The RNA samples are from a commercial source. Each tissue has three biological replicates; there are no technical replicates. The 11 tissues are listed below:

Tissues

Brain

Liver

Testis

Breast (human)

Lung (mouse, rat)

Thymus (mouse, rat)

Embryo (mouse, rat)

Pancreas (human)

Thyroid (human)

Heart

Prostate

 

Kidney

Skeletal Muscle

 

Mixtures
 

Mix 1

Mix 2

Mix 3

Mix 4

Mix 5

Mix 6

Mix 7

Mix 8

Mix 9

Brain

0.00

0.05

0.10

0.25

0.50

0.75

0.90

0.95

1.00

Heart

1.00

0.95

0.90

0.75

0.50

0.25

0.10

0.05

0.00