Discontinued The QuantStudio 3D Digital PCR System has been discontinued since March 2023 and we recommend the QuantStudio Absolute Q Digital PCR System.
Learn more about Absolute Q system ›

AnalysisSuite Cloud will be available until March 31, 2025.  Customers are encouraged to download their data.
Access AnalysisSuite app ›


Applied Biosystems™ QuantStudio™ 3D AnalysisSuite™ Cloud Software is used for the analysis of data derived from the QuantStudio 3D Digital PCR instrument. The software can be accessed from any web browser* upon logging in to our website (Figure 1). QuantStudio 3D AnalysisSuite software is an easy-to-use data analysis tool with an intuitive user interface that allows multiple applications such as pathogen, viral load, and copy number detection.

QuantStudio 3D AnalysisSuite Cloud Software enables analysis of QuantStudio 3D chips and accurate, highly precise measurements of genomic targets in copies per microliter on the QuantStudio 3D chip (Figure 2). QuantStudio 3D AnalysisSuite software also allows low-fold detection comparison and ratio analysis of genomic targets, as well as copy number variation.

Automated Data Transfer Choice
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Figure 1. Automated data transfer choice
Data files can be automatically transferred to QuantStudio 3D AnalysisSuite software on web.

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Figure 2. AnalysisSuite software results
Results are reported in copies per reaction and copies per micoliter with confidence intervals and precision values.

Multi-chip projects

Multiple chips can be combined and analyzed in a single project. With wireless or LAN connectivity, QuantStudio 3D experiment files can be automatically uploaded to your personal QuantStudio 3D AnalysisSuite cloud workspace and combined into a project. Up to 100 chips can be combined into a project, with quality control features that enable you to inspect each chip individually. Data can be combined across all the chips and assessed as an absolute value or as individual data points (Figure 3). Values such as copies/μL and total number of wells are reported, as well as relevant statistics such as configurable confidence intervals and precision values.

Data from multiple chips can be combined to automatically display a scatter plot based on color of FAM and VIC events. For further quality control, the user can manually define the boundaries of these events including those wells that are undetermined and use the software to calculate a ratio of rare to wild-type events across the chips in a project (Figure 4).

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Figure 3. Examine data across replicates or combined view for enhanced precision
Data can be viewed across replicates and precision values are calculated per replicate. Replicate data can also be combined to show an increase in precision and data accuracy.

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Figure 4. Ratio analysis & low-fold detection
Ideal for ratio analysis or low-fold detection to perform applications such as copy number variation. For further quality control, the boundaries of FAM, VIC, and undetermined events can be manually defined. The software calculates a ratio across the chips in a project.

Key Product Features:

  • Easy to use - intuitive user interface optimized for a web browser*
  • Comprehensive - contains features for quality control on a per-chip basis
  • Multi-chip analysis tools - visualize fold change and biological significance with scatter plots for establishing relationships between samples on a per-plate basis
  • Secure - safely store hundreds of QuantStudio 3D data files in your personalized, cloud-based QuantStudio3D AnalysisSuite workspace

Launch QuantStudio 3D AnalysisSuite Cloud Software ›

QuantStudio 3D AnalysisSuite Read Me

Software Downloads

*QuantStudio 3D AnalysisSuite Cloud Software is optimized for use on Google Chrome.

Software Video Tutorials

Introduction to Using AnalysisSuite™ v3.0

What’s new in AnalysisSuite™ v3.1

For Research Use Only. Not for use in diagnostic procedures.