AmpliSeq HD Showcase
Custom library amplification technology uniquely sensitive to your needs

Ion AmpliSeq HD technology is a new amplicon-based library preparation technology for Ion Torrent next-generation sequencing (NGS) that gives you the power to design your own panels and find variants with a low limit of detection—down to 0.1% for cell-free DNA samples. This revolutionary technology enables researchers to routinely get answers when ultrahigh sensitivity is required, such as when detecting low-frequency alleles in circulating tumor DNA or trace pathogenic microbial species in blood.

Combined with the Ion GeneStudio S5 sequencers, Ion AmpliSeq HD panels offer a flexible targeted-NGS solution for:

  • Cancer research
  • Infectious disease research
  • Microbial studies
  • Gene expression studies

Get ultrahigh sensitivity

Sign up for a live webinar

Amplexa Genetics from Denmark will share details of how Ion AmpliSeq HD panels address the need for ultrahigh sensitive detection in inherited disease research and their potential to deliver new insights about the causes of genetic diseases.

Reserve your spot ›

How does Ion AmpliSeq HD technology work?

Ion AmpliSeq HD technology leverages unique molecular tags, or UMTs, and the made-to-order design pipeline in Ion AmpliSeq Designer to help deliver results with ultrahigh sensitivity.

Watch the video below to learn more about this novel technology.

Unmatched sensitivity for your research

As genetic research rapidly evolves, the ability to confidently detect low-frequency variants or quantitate transcript-level expression is becoming more critical to the development of NGS assays with ultrahigh sensitivity. Ion AmpliSeq HD panels have been shown to achieve a 0.1% limit of detection for cell-free DNA samples, with >99% specificity for SNVs, hotspots, indels, CNVs, and fusions. Ion AmpliSeq HD panels support both DNA and RNA samples and require as little as 1 ng nucleic acids input from FFPE samples.

LOD data
Figure 1. Amplicon coverage and input material determine limit of detection using Ion AmpliSeq HD panels.

Rapid two-day targeted NGS workflow

Select targets


Design and order Ion AmpliSeq HD panel at


  • Library prep (Ion AmpliSeq HD Library Kit, Ion AmpliSeq HD Dual Barcode Kit)
  • Automated template prep (Ion Chef System)


  • Ion GeneStudio S5 Systems


  • Torrent Suite Software
  • Ion Reporter Software
  • Oncomine Knowledgebase Software

Power and speed for targeted NGS analysis

Ion AmpliSeq HD panels help you get NGS results with ultra-high sensitivity. To do it faster, use the Ion GeneStudio S5 Series.

Learn more ›