Dextran, Biotin, 3000 MW, Lysine Fixable (BDA-3000)
Dextran, Biotin, 3000 MW, Lysine Fixable (BDA-3000)
Invitrogen™

Dextran, Biotin, 3000 MW, Lysine Fixable (BDA-3000)

Labeled dextrans are hydrophilic polysaccharides most commonly used in microscopy studies to monitor cell division, track the movement of liveRead more
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Catalog NumberQuantity
D713510 mg
Catalog number D7135
Price (MXN)
-
Quantity:
10 mg
Labeled dextrans are hydrophilic polysaccharides most commonly used in microscopy studies to monitor cell division, track the movement of live cells, and to report the hydrodynamic properties of the cytoplasmic matrix. The labeled dextran is commonly introduced into the cells via microinjection.

Need a different emission spectrum or longer tracking? View our other mammalian cell tracking products.

Dextran Specifications:

Label (Ex/Em): None (Biotinylated)
Size: 3,000 MW
Charge: Anionic
Fixable: Fixable via Lysine

High Manufacturing Standards of Molecular Probes™ Dextrans
We offer more than 50 fluorescent and biotinylated dextran conjugates in several molecular weight ranges. Dextrans are hydrophilic polysaccharides characterized by their moderate-to-high molecular weight, good water solubility, and low toxicity. They also generally exhibit low immunogeniticy. Dextrans are biologically inert due to their uncommon poly-(α-D-1,6-glucose) linkages, which render them resistant to cleavage by most endogenous cellular glycosidases.

In most cases, Molecular Probes™ fluorescent dextrans are much brighter and have higher negative charge than dextrans available from other sources. Furthermore, we use rigorous methods for removing as much unconjugated dye as practical, and then assay our dextran conjugates by thin-layer chromatography to help ensure the absence of low molecular weight contaminants.

A Wide Selection of Substituents and Molecular Weights
Molecular Probes™ dextrans are conjugated to biotin or a wide variety of fluorophores, including seven of our Alexa Fluor™ dyes (Molecular Probes dextran conjugates–Table 14.4) and are available in these nominal molecular weights (MW): 3,000; 10,000; 40,000; 70,000; 500,000; and 2,000,000 daltons.

Dextran Net Charge and Fixability
We employ succinimidyl coupling of our dyes to the dextran molecule, which, in most cases, results in a neutral or anionic dextran. The reaction used to produce the Rhodamine Green™ and Alexa Fluor 488 dextrans results in the final product being neutral, anionic, or cationic. The Alexa Fluor, Cascade Blue, lucifer yellow, fluorescein, and Oregon Green dextrans are intrinsically anionic, whereas most of the dextrans labeled with the zwitterionic rhodamine B, tetramethylrhodamine, and Texas Red™ dyes are essentially neutral. To produce more highly anionic dextrans, we have developed a proprietary procedure for adding negatively charged groups to the dextran carriers; these products are designated “polyanionic” dextrans.

Some applications require that the dextran tracer be treated with formaldehyde or glutaraldehyde for subsequent analysis. For these applications, we offer “lysine-fixable” versions of most of our dextran conjugates of fluorophores or biotin. These dextrans have covalently bound lysine residues that permit dextran tracers to be conjugated to surrounding biomolecules by aldehyde-mediated fixation for subsequent detection by immunohistochemical and ultrastructural techniques. We have also shown that all of our 10,000 MW Alexa Fluor dextran conjugates can be fixed with aldehyde-based fixatives.

Key Applications Using Labeled Dextrans
There are a multitude of citations describing the use of labeled dextrans. Some of the most common uses include:

Neuronal tracing (anterograde and retrograde) in live cells
Cell lineage tracing in live cells
Neuroanatomical tracing
Examining intercellular communications (e.g., in gap junctions, during wound healing, and during embryonic development)
Investigating vascular permeability and blood–brain barrier integrity
Tracking endocytosis
Monitoring acidification (some dextran–dye conjugates are pH-sensitive)
Studying the hydrodynamic properties of the cytoplasmic matrix

For Research Use Only. Not intended for any animal or human therapeutic or diagnostic use.
For Research Use Only. Not for use in diagnostic procedures.
Specifications
Label or DyeBiotin and Other Haptens
Product TypeDextran
Quantity10 mg
Shipping ConditionRoom Temperature
Product LineInvitrogen
Unit SizeEach
Contents & Storage
Store in freezer (-5 to -30°C).

Frequently asked questions (FAQs)

I can't see the structural details of neurons when I inject my fluorescent dextran. What can I do to improve the detailed structure?

If you want to see the most detailed structure you should use the low molecular weight conjugated dextrans such as the 3,000 MW dextrans.

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.

Why isn't my fluorescently conjugated dextran signal retained after fixation?

Ensure that the dextran you are using is the fixable form (i.e., contains a primary amine). Dextrans that do not contain a primary amine will not be fixed. Another factor could be that the concentration of the dextran is too low, and the concentration use can be increased up to 10 mg/mL.

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.

What are the charges of the dextrans?

We do not determine the net charge of the dextran conjugates. The net charge depends on the fluorophore used to label the dextran and the method of preparing the conjugate. We label some dextrans as neutral or anionic based on the fluorophore used, however the net charge of the dextran may not always be the same as the dye. The Alexa Fluor, Cascade Blue, Lucifer Yellow, fluorescein, and Oregon Green dextrans are intrinsically anionic, whereas most of the dextrans labeled with the zwitterionic Rhodamine B, tetramethylrhodamine and Texas Red dyes are essentially neutral.

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.

What size dextran is best for neuronal tracing?

Dextrans with molecular weights from 3,000 to 70,000 have been used, however the 3,000 and 10,000 MW dextrans are most commonly used for neuronal tracing. The 3,000 MW dextrans are used for more detailed tracing of fine neuronal projections, investigating gap junctions, and diffuse more quickly; while the 10,000 MW dextrans have slower distribution, longer cellular retention, and do not cross gap junctions.

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.

Do you have a neuronal tracing protocol?

The NeuroTrace BDA-10,000 Neuronal Tracer Kit (Cat. No. N7167) manual has a good protocol for injection procedures and neuronal tracing using the10,000 MW lysine-fixable biotin dextran amine (BDA). This protocol could potentially be applied to other fluorescent dextrans.

Please review Tables 1a and 1b on pages 4 and 5 - https://tools.thermofisher.com/content/sfs/manuals/mp07167.pdf

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.

Citations & References (21)

Citations & References
Abstract
Improved retrograde axonal transport and subsequent visualization of tetramethylrhodamine (TMR) -dextran amine by means of an acidic injection vehicle and antibodies against TMR.
Authors:Kaneko T, Saeki K, Lee T, Mizuno N
Journal:J Neurosci Methods
PubMed ID:8740593
'We studied the ability of various dextran amines (DA) to retrogradely label cortical neurons to the full extent of their dendritic configurations. Corticothalamic neurons were labeled by pressure injection of DA into the ventrobasal thalamic nuclei of the rat brain. Of fluorescein-, Texas Red-, Cascade Blue- and tetramethylrhodamine (TMR)-DAs of ... More
Evidence for differential cortical input to direct pathway versus indirect pathway striatal projection neurons in rats.
Authors:Lei W, Jiao Y, Del Mar N, Reiner A,
Journal:J Neurosci
PubMed ID:15385612
'The two main types of corticostriatal neurons are those that project only intratelencephalically (IT-type), the intrastriatal terminals of which are 0.41 microm in mean diameter, and those that send their main axon into pyramidal tract and have a collateral projection to striatum (PT-type), the intrastriatal terminals of which are 0.82 ... More
Conjunction of vocal production and perception regulates expression of the immediate early gene ZENK in a novel cortical region of songbirds.
Authors:Bottjer SW, Alderete TL, Chang D,
Journal:J Neurophysiol
PubMed ID:20107119
'The cortical nucleus LMAN (lateral magnocellular nucleus of the anterior nidopallium) provides the output of a basal ganglia pathway that is necessary for acquisition of learned vocal behavior during development in songbirds. LMAN is composed of two subregions, a core and a surrounding shell, that give rise to independent pathways ... More
Resolving the detailed structure of cortical and thalamic neurons in the adult rat brain with refined biotinylated dextran amine labeling.
Authors:Ling C, Hendrickson ML, Kalil RE,
Journal:PLoS One
PubMed ID:23144777
Biotinylated dextran amine (BDA) has been used frequently for both anterograde and retrograde pathway tracing in the central nervous system. Typically, BDA labels axons and cell somas in sufficient detail to identify their topographical location accurately. However, BDA labeling often has proved to be inadequate to resolve the fine structural ... More
Neuronal classification and marker gene identification via single-cell expression profiling of brainstem vestibular neurons subserving cerebellar learning.
Authors:Kodama T, Guerrero S, Shin M, Moghadam S, Faulstich M, du Lac S,
Journal:J Neurosci
PubMed ID:22674258
Identification of marker genes expressed in specific cell types is essential for the genetic dissection of neural circuits. Here we report a new strategy for classifying heterogeneous populations of neurons into functionally distinct types and for identifying associated marker genes. Quantitative single-cell expression profiling of genes related to neurotransmitters and ... More