Assay Details

Gene Symbol: SHMT1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001281786.1	NP_001268715.1	1 - 2	197		58
	NM_004169.4	NP_004160.3	1 - 2	197		58
	NM_148918.2	NP_683718.1	1 - 2	197		58
	XM_011523992.2	XP_011522294.1	1 - 2	165		58
GenBank mRNA	AK223552.1	-	1 - 2	128		58
	AK298415.1	-	1 - 2	129		58
	AK302834.1	-	1 - 2	135		58
	BC007979.2	-	1 - 2	43	3687873	58
	BC022874.1	-	1 - 2	47	4108106	58
	BC038598.1	-	1 - 2	54	4523709	58
	Y14485.1	-	1 - 2	163		58

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1700009974.hg.1
This assay targets the same location as HTA transcript cluster(s) TC17001201.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK298415.1,AK302834.1,BC007979.2,BC022874.1,BC038598.1,NM_001281786.1,NM_004169.4,NM_148918.2,XM_011523992.2,Y14485.1 transcripts.

Set Membership:

Ambion siRNA available

Amplicon length less than or equal to 70

Mammalian Gene Collection

Homo sapiens

1700

Inventoried

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SHMT1

Panther Classification:

Molecular Function -

methyltransferase

transferase

metabolite interconversion enzyme

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix ABI

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000316694.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000352886.10	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000354098.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395682.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395682.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395682.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395682.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395682.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395682.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000395684.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000579558.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000580002.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000582352.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000582352.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000582352.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000582653.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000582653.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000582653.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000582653.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000582653.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000582653.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000583780.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000583780.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000583780.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000583780.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000617912.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000618902.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000618902.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000618902.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	ENST00000618902.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_001281786.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_004169.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NM_148918.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700009974.hg.1	NR_106836.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100013937.hg.1	ENST00000419974.2	Ensembl
Affymetrix Human Clariom D Assay	TC0100013937.hg.1	ENST00000419974.2	Ensembl

Availability	Inventoried
Catalog #	4331182
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System Message

Genomic Map