Assay Details

Gene Symbol: PRPF38B
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001349757.2	NP_001336686.1	4 - 5	830		118
	NM_001349758.2	NP_001336687.1	4 - 5	840		118
	NM_001349759.2	NP_001336688.1	3 - 4	777		118
	NM_001349761.2	NP_001336690.1	4 - 5	840		118
	NM_001349762.2	NP_001336691.1	3 - 4	787		118
	NM_001349763.2	NP_001336692.1	4 - 5	830		118
	NM_001349764.2	NP_001336693.1	3 - 4	787		118
	NM_001349765.2	NP_001336694.1	3 - 4	777		118
	NM_001349766.2	NP_001336695.1	3 - 4	787		118
	NM_001349767.2	NP_001336696.1	4 - 5	840		118
	NM_001349768.2	NP_001336697.1	3 - 4	777		118
	NM_001349769.2	NP_001336698.1	3 - 4	777		118
	NM_001349770.2	NP_001336699.1	4 - 5	830		118
	NM_001349771.2	NP_001336700.1	3 - 4	777		118
	NM_018061.4	NP_060531.2	3 - 4	777		118
	XM_011541687.4	XP_011539989.1	3 - 4	777		118
	XM_047423902.1	XP_047279858.1	3 - 4	777		118
GenBank mRNA	AK001192.1	-	3 - 4	571		118
	AL833950.1	-	4 - 5	799		118
	BC007757.2	-	3 - 4	751		118
	BC009453.1	-	3 - 4	747		118
	BC016296.1	-	3 - 4	747		118
	BC024275.1	-	3 - 4	751		118
	BC034581.1	-	4 - 5	813		118
	BC040127.1	-	3 - 4	764		118
	BC053838.1	-	3 - 4	763		118
	BC107801.1	-	3 - 4	504		118
	BC130346.1	-	3 - 4	523		118
	BC132963.1	-	3 - 4	523		118

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0100009328.hg.1
This assay targets the same location as HTA transcript cluster(s) TC01000932.hg.1

Additional Information:

This assay is in the 5'UTR region of the NM_001349758.2, NM_001349759.2, NM_001349761.2, NM_001349762.2, NM_001349763.2, NM_001349764.2, NM_001349765.2, NM_001349766.2, NM_001349767.2, NM_001349768.2, NM_001349769.2, NM_001349770.2, NM_001349771.2 transcripts.

Set Membership:

Ambion siRNA available

Amplicon length greater than or equal to 101

3' Most

Mammalian Gene Collection

Detect Genomic DNA

Recommended Assay

Homo sapiens

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene PRPF38B

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR01014634.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01014634.hg.1	ENST00000370022.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01014634.hg.1	ENST00000370025.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01014634.hg.1	ENST00000467302.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01014634.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01014634.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01014634.hg.1	TC01000932.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000485810.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000485810.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	ENST00000485810.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000485810.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000485810.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	ENST00000485810.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	TC0100009328.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	ENST00000370021.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	ENST00000370022.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	ENST00000370025.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	ENST00000467302.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	NM_018061.3	Refseq
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	NR_037185.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100166429.hg.1	TC0100009328.hg.1	Clariom D TC

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Genomic Map