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          • › Search Tool
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          • › Mm00446859_m1
          See other OTX2 GE Assays ›
          Gene Symbol:
          Otx2
          Gene Name:
          orthodenticle homolog 2
          Gene Aliases:
          E130306E05Rik
          Chromosome Location:
          Chr.14: 48657452 - 48667644 on Build GRCm38
          Species:
          Mouse
          Species Specific ID (Flybase ID):
          -
          Assay ID Mm00446859_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Otx2
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_001286481.1 NP_001273410.1 4 - 5 675 74
          NM_001286482.1 NP_001273411.1 4 - 5 651 74
          NM_001286483.1 NP_001273412.1 3 - 4 491 74
          NM_144841.4 NP_659090.1 2 - 3 573 74
          GenBank mRNA AK053741.1 - 3 - 4 488 74
          AK081535.1 - 3 - 4 492 74
          AK087527.1 - 3 - 4 489 74
          BC017609.1 - 2 - 3 573 4527414 74
          BC027104.1 - 4 - 5 533 5359966 74
          BC029667.1 - 4 - 5 537 5362013 74
          BQ959742.1 - 4 - 5 651 74
          CO424557.1 - 4 - 5 576 74
          X68884.1 - 1 - 2 151 74

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          More Information


          Updated Mapping Information

          This assay targets the same location as MTA transcript cluster(s) TC1400001948.mm.1

          Set Membership:

          Ambion siRNA available Amplicon length between 71 and 85 Mammalian Gene Collection Recommended Assay Mus musculus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Otx2

          Panther Classification:

          Molecular Function -

          homeodomain transcription factor

          Gene Ontology Categories:

          Function(s) Process(es)

          cell fate specification
          regulation of transcription, DNA-templated
          regulation of transcription from RNA polymerase II promoter
          transcription from RNA polymerase II promoter
          protein complex assembly
          multicellular organism development
          axon guidance
          central nervous system development
          endoderm development
          organ morphogenesis
          anterior/posterior pattern specification
          dorsal/ventral pattern formation
          metencephalon development
          cell differentiation
          neuron differentiation
          forebrain development
          midbrain development
          somite rostral/caudal axis specification
          positive regulation of embryonic development
          inner ear morphogenesis
          eye photoreceptor cell fate commitment
          cell fate commitment
          positive regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          neuron fate commitment
          neuron fate determination
          diencephalon morphogenesis
          anatomical structure development
          primitive streak formation
          positive regulation of gastrulation
          RNA polymerase II core promoter proximal region sequence-specific DNA binding
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          DNA binding
          transcription factor activity, sequence-specific DNA binding
          protein binding
          sequence-specific DNA binding
          protein heterodimerization activity

          MicroArray Probes:

          Affymetrix ABI

          Array Name Probe IDs Targets Target Type
          Affymetrix Mouse Clariom S Array PSR1400014681.mm.1 NM_001286481.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014681.mm.1 NM_001286482.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014681.mm.1 NM_001286483.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014681.mm.1 NM_144841.4 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014681.mm.1 TC1400001948.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1400014682.mm.1 NM_001286481.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014682.mm.1 NM_001286482.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014682.mm.1 NM_001286483.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014682.mm.1 NM_144841.4 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014682.mm.1 TC1400001948.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1400014683.mm.1 NM_001286481.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014683.mm.1 NM_001286482.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014683.mm.1 NM_001286483.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014683.mm.1 NM_144841.4 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014683.mm.1 TC1400001948.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1400014685.mm.1 NM_001286481.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014685.mm.1 NM_001286482.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014685.mm.1 NM_001286483.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014685.mm.1 NM_144841.4 Refseq
          Affymetrix Mouse Clariom S Array PSR1400014685.mm.1 TC1400001948.mm.1 MTA TC
          Array Name Probe IDs Targets Target Type
          ABI Mouse Genome Survey Microarray 908792 - -

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