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- Gene Symbol:
-
Prdm9 - Gene Name:
- PR domain containing 9
- Gene Aliases:
- BC012016, Dsbc1, G1-419-29, Meisetz, Rcr1, repro7
- Chromosome Location:
- Chr.17: 15543072 - 15564379 on Build GRCm38
- Species:
- Mouse
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Prdm9 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_144809.2 | NP_659058.2 | 8 - 9 | 980 | 87 | |
| GenBank mRNA | AB844106.1 | - | 8 - 9 | 980 | 87 | |
| AB844107.1 | - | 8 - 9 | 980 | 87 | ||
| AB844108.1 | - | 8 - 9 | 980 | 87 | ||
| AB844109.1 | - | 8 - 9 | 986 | 87 | ||
| AB844110.1 | - | 8 - 9 | 980 | 87 | ||
| AB844111.1 | - | 8 - 9 | 958 | 87 | ||
| AB844112.1 | - | 8 - 9 | 958 | 87 | ||
| AB844113.1 | - | 8 - 9 | 980 | 87 | ||
| AB844114.1 | - | 8 - 9 | 980 | 87 | ||
| AB844116.1 | - | 983 | 87 | |||
| BC012016.1 | - | 10 - 11 | 1121 | 87 | ||
| BC023014.1 | - | 3 - 4 | 642 | 5365459 | 87 | |
| BC049903.1 | - | 10 - 11 | 1121 | 4501059 | 87 | |
| FJ212287.1 | - | 8 - 9 | 958 | 87 | ||
| GU216230.1 | - | 8 - 9 | 958 | 87 | ||
| HQ704390.1 | - | 8 - 9 | 958 | 87 | ||
| HQ704391.1 | - | 8 - 9 | 958 | 87 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as MTA transcript cluster(s) TC1700001501.mm.1Set Membership: |
Ambion siRNA available
Amplicon length between 86 and 100
Mammalian Gene Collection
Recommended Assay
Mus musculus
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
meiotic gene conversion
transcription, DNA-templated
regulation of transcription, DNA-templated
spermatogenesis
positive regulation of reciprocal meiotic recombination
chromatin modification
histone methylation
methylation
histone lysine methylation
positive regulation of transcription from RNA polymerase II promoter
meiotic cell cycle
histone H3-K4 methylation
positive regulation of meiosis I
nucleic acid binding
methyltransferase activity
recombination hotspot binding
transferase activity
histone-lysine N-methyltransferase activity
histone methyltransferase activity (H3-K4 specific)
sequence-specific DNA binding
metal ion binding
meiotic gene conversion
transcription, DNA-templated
regulation of transcription, DNA-templated
spermatogenesis
positive regulation of reciprocal meiotic recombination
chromatin modification
histone methylation
methylation
histone lysine methylation
positive regulation of transcription from RNA polymerase II promoter
meiotic cell cycle
histone H3-K4 methylation
positive regulation of meiosis I
nucleic acid binding
methyltransferase activity
recombination hotspot binding
transferase activity
histone-lysine N-methyltransferase activity
histone methyltransferase activity (H3-K4 specific)
sequence-specific DNA binding
metal ion binding
MicroArray Probes:
Agilent
Affymetrix
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066337 | - | - |
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066340 | - | - |
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066339 | - | - |
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066336 | - | - |
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066338 | - | - |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2027057 | FJ212287.1 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2027057 | NM_144809.2 | mouse_transcriptome |
| Agilent Whole Mouse Genome Microarray 4x44K v2 | A_55_P2027052 | NM_144809.2 | mouse_transcriptome |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 87120 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 468359 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 304473 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 363361 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 252700 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 77153 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 146959 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 798219 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 946780 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 219694 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 79528 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 400320 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 253040 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 357853 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 1x1M | 696815 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 4x180K | 109122 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 4x180K | 142815 | - | - |
| Agilent SurePrint G3 Mouse CGH Microarray 4x180K | 70550 | - | - |
| Agilent Mouse Genome CGH Microarray 44K G4426B | A_53_P113721 | - | - |
| Agilent Mouse Genome CGH Microarray 44K G4426B | A_53_P107627 | - | - |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2027052 | NM_144809.2 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2027057 | FJ212287.1 | mouse_transcriptome |
| SurePrint G3 Mouse Gene Expression Microarray G4852A | A_55_P2027057 | NM_144809.2 | mouse_transcriptome |
| Agilent Mouse Genome CGH Microarray 244A (G4415A) | A_53_P107627 | - | - |
| Agilent Mouse Genome CGH Microarray 244A (G4415A) | A_53_P113721 | - | - |
| Whole Mouse Genome G4122A | A_51_P215513 | BC049903.1 | mouse_transcriptome |
| Whole Mouse Genome G4122A | A_51_P215513 | BC012016.1 | mouse_transcriptome |
| Agilent Mouse Developmental Microarray 44K G2519A Option 002 | A_66_P111317 | - | - |
| Agilent Mouse Developmental Microarray 44K G2519A Option 002 | A_66_P102333 | - | - |
| Agilent Mouse Genome CGH Microarray 105A (G4416A) | A_53_P113721 | - | - |
| Agilent Mouse Genome CGH Microarray 105A (G4416A) | A_53_P107627 | - | - |
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066340 | - | - |
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066339 | - | - |
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066337 | - | - |
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066336 | - | - |
| Agilent Mouse CpG Island ChIP-on-Chip Microarray 2x105K | A_68_P31066338 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066361 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13334452 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13130284 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066367 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066283 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066314 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13211817 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13130281 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066290 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066371 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066211 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13347211 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066253 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066228 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066275 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13113633 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066341 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066273 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066345 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066251 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13283510 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066307 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066330 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066249 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066357 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13130266 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066214 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066277 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13081556 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13132354 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13190717 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066359 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066316 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066342 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066209 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066344 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066311 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066368 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13562641 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066351 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066304 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13520589 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066288 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13081555 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066245 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13247851 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066299 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066378 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066293 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066324 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066274 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13130283 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13113628 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066247 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13520591 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066246 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066298 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13113625 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13190722 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066215 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066222 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066279 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066308 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066272 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066327 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066376 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066260 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066356 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066303 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066268 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066224 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066306 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066315 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066263 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066350 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066269 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066372 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066265 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066313 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P13347210 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066333 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066255 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066362 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066340 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066226 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066266 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066360 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066221 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066295 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066366 | - | - |
| Agilent Six_ChIP_03_of_03_v2 | A_68_P31066256 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Mouse Gene 1.0 ST Array | 10448069 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448072 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448078 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448074 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448070 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448075 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448066 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448065 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448071 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448068 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448077 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448073 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448076 | - | - |
| Affymetrix Mouse Gene 1.0 ST Array | 10448067 | - | - |
| Affymetrix HT MG-430 PM Array Plate | 1426107_PM_at | - | - |
| Affymetrix Mouse Gene 1.1 ST Array | 10448064 | - | - |
| Mouse Genome 430 2.0 Array | 1426107_at | - | - |
| Mouse Genome 430 2.0 Array | 1426107_PM_at | - | - |
| Affymetrix GeneChip Mouse Genome 430 2.0 Array | 213389_at | - | - |
| Affymetrix GeneChip Mouse Genome 430 2.0 Array | 213389_PM_at | - | - |
| Affymetrix Mouse Clariom S Array | PSR1700013448.mm.1 | NM_144809.2.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013448.mm.1 | NM_144809.2 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013448.mm.1 | TC1700001501.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR1700013450.mm.1 | TC1700001501.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR1700013447.mm.1 | NM_144809.2.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013447.mm.1 | NM_144809.2 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013447.mm.1 | TC1700001501.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR1700013451.mm.1 | NM_144809.2.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013451.mm.1 | NM_144809.2 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013451.mm.1 | TC1700001501.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR1700013445.mm.1 | NM_144809.2.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013445.mm.1 | NM_144809.2 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013445.mm.1 | TC1700001501.mm.1 | MTA TC |
| Affymetrix Mouse Clariom S Array | PSR1700013446.mm.1 | NM_144809.2.1 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013446.mm.1 | NM_144809.2 | Refseq |
| Affymetrix Mouse Clariom S Array | PSR1700013446.mm.1 | TC1700001501.mm.1 | MTA TC |
| Mouse Expression Set 430 | 1426107_PM_at | - | - |
| Mouse Expression Set 430 | 1426107_at | - | - |
| Mouse Genome 430A 2.0 Array | 1426107_at | - | - |
| Mouse Genome 430A 2.0 Array | 1426107_PM_at | - | - |
| Affymetrix HT Mouse Genome 430A Array | 1426107_at | - | - |
| Affymetrix HT Mouse Genome 430A Array | 1426107_PM_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| MouseWG-6 v2 Expression BeadChip | 6020433 | - | - |
| Illumina mouse-6 v1.0 expression beadchip | 6020433 | - | - |
| Illumina mouseRef-8 v1.0 expression beadchip | 0006020433 | - | - |
| Illumina mouseRef-8 v1.1 expression beadchip | ILMN_2765331 | - | - |
| Illumina mouse-6 v1.1 expression beadchip | ILMN_2765331 | - | - |
| mouse-6 v1.1 (Illumina) | scl50281.11.1_88-S | - | - |
| Illumina Sentrix mouse-6.v1 bead array | 6020433 | - | - |
| Illumina Sentrix MouseRef-8 Expression BeadChip | scl50281.11.1_88-S | - | - |
| Illumina Sentrix Mouse-6 Expression BeadChip (2) | 6020433 | - | - |
| MouseRef-8 v2 Expression BeadChip | ILMN_2765331 | - | - |
| Illumina MouseWG-6 v2.0 expression beadchip | ILMN_2765331 | - | - |
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