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- Gene Symbol:
-
Brca1 - Gene Name:
- breast cancer 1, early onset
- Gene Aliases:
- -
- Chromosome Location:
- Chr.10: 89394821 - 89455009 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Brca1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_012514.1 | NP_036646.1 | 12 - 13 | 4348 | 87 | |
| XM_008768092.1 | XP_008766314.1 | 12 - 13 | 4564 | 87 | ||
| GenBank mRNA | AF036760.1 | - | 12 - 13 | 4348 | 87 | |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1000003834.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 86 and 100
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
double-strand break repair via homologous recombination
DNA replication
postreplication repair
double-strand break repair
regulation of gene expression by genetic imprinting
fatty acid biosynthetic process
cellular response to DNA damage stimulus
chromosome segregation
centrosome cycle
brain development
response to nutrient
intrinsic apoptotic signaling pathway in response to DNA damage
dosage compensation by inactivation of X chromosome
response to organic substance
response to ionizing radiation
positive regulation of vascular endothelial growth factor production
positive regulation of gene expression
protein ubiquitination
positive regulation of protein ubiquitination
response to estradiol
response to lipid
positive regulation of histone acetylation
negative regulation of histone acetylation
regulation of cell proliferation
chordate embryonic development
response to estrogen
regulation of DNA methylation
negative regulation of fatty acid biosynthetic process
positive regulation of DNA repair
positive regulation of angiogenesis
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of histone H3-K4 methylation
negative regulation of histone H3-K4 methylation
negative regulation of histone H3-K9 methylation
positive regulation of histone H3-K9 methylation
protein autoubiquitination
positive regulation of histone H4-K20 methylation
positive regulation of cell cycle arrest
cellular response to tumor necrosis factor
cellular response to indole-3-methanol
protein K6-linked ubiquitination
negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
regulation of cell motility
negative regulation of reactive oxygen species metabolic process
positive regulation of histone H3-K9 acetylation
positive regulation of histone H4-K16 acetylation
DNA binding
damaged DNA binding
RNA binding
ubiquitin-protein transferase activity
zinc ion binding
ligase activity
enzyme binding
ubiquitin protein ligase binding
transcription regulatory region DNA binding
double-strand break repair via homologous recombination
DNA replication
postreplication repair
double-strand break repair
regulation of gene expression by genetic imprinting
fatty acid biosynthetic process
cellular response to DNA damage stimulus
chromosome segregation
centrosome cycle
brain development
response to nutrient
intrinsic apoptotic signaling pathway in response to DNA damage
dosage compensation by inactivation of X chromosome
response to organic substance
response to ionizing radiation
positive regulation of vascular endothelial growth factor production
positive regulation of gene expression
protein ubiquitination
positive regulation of protein ubiquitination
response to estradiol
response to lipid
positive regulation of histone acetylation
negative regulation of histone acetylation
regulation of cell proliferation
chordate embryonic development
response to estrogen
regulation of DNA methylation
negative regulation of fatty acid biosynthetic process
positive regulation of DNA repair
positive regulation of angiogenesis
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of histone H3-K4 methylation
negative regulation of histone H3-K4 methylation
negative regulation of histone H3-K9 methylation
positive regulation of histone H3-K9 methylation
protein autoubiquitination
positive regulation of histone H4-K20 methylation
positive regulation of cell cycle arrest
cellular response to tumor necrosis factor
cellular response to indole-3-methanol
protein K6-linked ubiquitination
negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
regulation of cell motility
negative regulation of reactive oxygen species metabolic process
positive regulation of histone H3-K9 acetylation
positive regulation of histone H4-K16 acetylation
DNA binding
damaged DNA binding
RNA binding
ubiquitin-protein transferase activity
zinc ion binding
ligase activity
enzyme binding
ubiquitin protein ligase binding
transcription regulatory region DNA binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P294650 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 3576 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 940674 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 372945 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 734382 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 533855 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 931196 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 406789 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 360909 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 388193 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 601840 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 637827 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 565425 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 703173 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 611571 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 781765 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 484998 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 295318 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 567202 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 1797 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 329209 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 732019 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 87090 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 91366 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 855592 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 917544 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 457047 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 459603 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 532442 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 699130 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 74471 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 924793 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 258611 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 278705 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 342617 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 804314 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 147058 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 746382 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 224309 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 467306 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 304122 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 801931 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 933140 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 523352 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 192585 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 525879 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 227282 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 39490 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 186105 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 184155 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 81451 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 164129 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 73785 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 105066 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 79976 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 113550 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 158288 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 95837 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 57924 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P294650 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P294650 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P294650 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P294650 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 3869 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 46361 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 25483 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 71682 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10747644 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747658 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747649 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747664 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747643 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747652 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747661 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747647 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747663 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747651 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747662 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747642 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747657 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747656 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747659 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747641 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747646 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747653 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747648 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747650 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747645 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747660 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747655 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10747640 | - | - |
| Rat Genome 230 2.0 Array | 1387540_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1387540_at | - | - |
| Affymetrix HT Rat Focus Array | 1387540_at | - | - |
| Affymetrix HT Rat Focus Array | 1387540_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1000034533.rn.1 | TC1000003834.rn.1 | RTA TC |
| Rat Expression Set 230 | 1387540_at | - | - |
| Rat Expression Set 230 | 1387540_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10747640 | - | - |
| Rat Genome U34 Set | S82500cds_s_at | - | - |
| Rat Genome U34 Set | AF036760_at | - | - |
| Rat Genome U34 Set | AF036760_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 20696406 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1353679 | - | - |
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