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- Gene Symbol:
-
Shank3 - Gene Name:
- SH3 and multiple ankyrin repeat domains 3
- Gene Aliases:
- Prosap2
- Chromosome Location:
- Chr.7: 130474278 - 130534679 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Shank3 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_021676.1 | NP_067708.1 | 20 - 21 | 2576 | 74 | |
| GenBank mRNA | AF133301.1 | - | 20 - 21 | 2576 | 74 | |
| AF159047.1 | - | 15 - 16 | 1653 | 74 | ||
| AJ133120.1 | - | 20 - 21 | 2577 | 74 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0700001650.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 71 and 85
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
MAPK cascade
embryonic epithelial tube formation
synapse assembly
learning
memory
striatal medium spiny neuron differentiation
adult behavior
negative regulation of actin filament bundle assembly
social behavior
locomotory exploration behavior
vocal learning
negative regulation of cell volume
positive regulation of long-term neuronal synaptic plasticity
brain morphogenesis
neuromuscular process controlling balance
protein oligomerization
positive regulation of synapse structural plasticity
positive regulation of synaptic transmission, glutamatergic
dendritic spine morphogenesis
positive regulation of dendritic spine development
regulation of dendritic spine morphogenesis
vocalization behavior
postsynaptic density assembly
AMPA glutamate receptor clustering
NMDA glutamate receptor clustering
guanylate kinase-associated protein clustering
regulation of long-term synaptic potentiation
positive regulation of glutamate receptor signaling pathway
regulation of long term synaptic depression
positive regulation of excitatory postsynaptic potential
regulation of grooming behavior
regulation of behavioral fear response
positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
actin binding
protein binding
protein C-terminus binding
zinc ion binding
SH3 domain binding
GKAP/Homer scaffold activity
ionotropic glutamate receptor binding
identical protein binding
protein self-association
scaffold protein binding
MAPK cascade
embryonic epithelial tube formation
synapse assembly
learning
memory
striatal medium spiny neuron differentiation
adult behavior
negative regulation of actin filament bundle assembly
social behavior
locomotory exploration behavior
vocal learning
negative regulation of cell volume
positive regulation of long-term neuronal synaptic plasticity
brain morphogenesis
neuromuscular process controlling balance
protein oligomerization
positive regulation of synapse structural plasticity
positive regulation of synaptic transmission, glutamatergic
dendritic spine morphogenesis
positive regulation of dendritic spine development
regulation of dendritic spine morphogenesis
vocalization behavior
postsynaptic density assembly
AMPA glutamate receptor clustering
NMDA glutamate receptor clustering
guanylate kinase-associated protein clustering
regulation of long-term synaptic potentiation
positive regulation of glutamate receptor signaling pathway
regulation of long term synaptic depression
positive regulation of excitatory postsynaptic potential
regulation of grooming behavior
regulation of behavioral fear response
positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
actin binding
protein binding
protein C-terminus binding
zinc ion binding
SH3 domain binding
GKAP/Homer scaffold activity
ionotropic glutamate receptor binding
identical protein binding
protein self-association
scaffold protein binding
MicroArray Probes:
Agilent
Affymetrix
ABI
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P060682 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P060677 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 477109 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 617831 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 795799 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 325408 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 872957 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 320493 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 336039 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 542896 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 308984 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 682099 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 48088 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 902808 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 752384 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 648615 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 82675 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 853744 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 734086 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 888870 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 570999 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 68893 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 674382 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 438641 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 237220 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 524142 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 162891 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 613146 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 423263 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 789296 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 13559 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 967123 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 540651 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 733036 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 211954 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 1875 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 301540 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 429135 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 929929 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 841052 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 152110 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 293978 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 736026 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 715328 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 39150 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 829257 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 581463 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 612489 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 966110 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 53020 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 150470 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 86597 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 55479 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 58695 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 90228 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 120976 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 108677 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 66697 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P060677 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P060682 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P060677 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P060682 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P060677 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P060682 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_42_P715836 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 71020 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 32497 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 104522 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 14772 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 43026 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10898624 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898627 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898639 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898644 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898631 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898642 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898640 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898635 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898632 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898629 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898630 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898628 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898646 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898636 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898625 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898637 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898623 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898643 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898638 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898634 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898641 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898645 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898633 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898626 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10898622 | - | - |
| Rat Genome 230 2.0 Array | 1367658_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1367658_at | - | - |
| Affymetrix HT Rat Focus Array | 1367658_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1367658_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0700012730.rn.1 | TC0700001650.rn.1 | RTA TC |
| Rat Expression Set 230 | 1367658_at | - | - |
| Rat Expression Set 230 | 1367658_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10898622 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21487506 | - | - |
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