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- Gene Symbol:
-
Nr1h4 - Gene Name:
- nuclear receptor subfamily 1, group H, member 4
- Gene Aliases:
- Fxr
- Chromosome Location:
- Chr.7: 30003429 - 30162095 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Nr1h4 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_021745.1 | NP_068513.1 | 3 - 4 | 609 | 95 | |
| XM_008765260.1 | XP_008763482.1 | 2 - 3 | 967 | 95 | ||
| XM_008765261.1 | XP_008763483.1 | 2 - 3 | 966 | 95 | ||
| XM_008765262.1 | XP_008763484.1 | 3 - 4 | 648 | 95 | ||
| GenBank mRNA | BC083815.1 | - | 2 - 3 | 487 | 7110420 | 95 |
| U18374.1 | - | 3 - 4 | 609 | 95 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0700002446.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 86 and 100
Nuclear Receptor
Mammalian Gene Collection
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription from RNA polymerase II promoter
regulation of carbohydrate metabolic process
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
bile acid metabolic process
response to glucose
intracellular receptor signaling pathway
response to lipopolysaccharide
regulation of urea metabolic process
intracellular bile acid receptor signaling pathway
steroid hormone mediated signaling pathway
positive regulation of transcription from RNA polymerase II promoter
digestive tract development
negative regulation of bile acid biosynthetic process
cellular response to organonitrogen compound
cellular response to bile acid
positive regulation of glutamate metabolic process
positive regulation of ammonia assimilation cycle
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription factor binding
DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
steroid hormone receptor activity
receptor activity
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
thyroid hormone receptor activity
zinc ion binding
bile acid binding
bile acid receptor activity
peptide binding
sequence-specific DNA binding
retinoid X receptor binding
chenodeoxycholic acid binding
negative regulation of transcription from RNA polymerase II promoter
regulation of carbohydrate metabolic process
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
bile acid metabolic process
response to glucose
intracellular receptor signaling pathway
response to lipopolysaccharide
regulation of urea metabolic process
intracellular bile acid receptor signaling pathway
steroid hormone mediated signaling pathway
positive regulation of transcription from RNA polymerase II promoter
digestive tract development
negative regulation of bile acid biosynthetic process
cellular response to organonitrogen compound
cellular response to bile acid
positive regulation of glutamate metabolic process
positive regulation of ammonia assimilation cycle
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription factor binding
DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
steroid hormone receptor activity
receptor activity
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
thyroid hormone receptor activity
zinc ion binding
bile acid binding
bile acid receptor activity
peptide binding
sequence-specific DNA binding
retinoid X receptor binding
chenodeoxycholic acid binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P150587 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P128653 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 6767 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 91220 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 551121 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 471538 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 745524 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 130525 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 445593 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 75284 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 467960 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 742759 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 149538 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 106671 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 310401 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 548174 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 682906 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 883486 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 522079 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 541470 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 344826 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 649605 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 448155 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 589219 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 595735 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 847151 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 815439 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 925476 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 86868 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 972149 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 732067 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 734239 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 580301 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 634982 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 485219 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 919162 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 932607 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 114846 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 195304 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 656778 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 659644 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 786168 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 834358 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 351116 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 374653 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 968806 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 95998 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 153731 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 432739 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 216471 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 583472 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 898340 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 463999 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 531402 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 749099 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 602900 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 926311 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 73199 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 768861 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 2520 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 724841 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 105170 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 586981 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 161018 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 43755 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 134573 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 73520 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 72725 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 68958 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 149340 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 90109 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 70445 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 157742 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 18384 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 106858 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P150587 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P128653 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P150587 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P128653 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P150587 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P128653 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P177713 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 31608 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 50090 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 80791 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 93602 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 96299 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 39874 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10901725 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901729 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901724 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901726 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901733 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901723 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901730 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901727 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901728 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901731 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901734 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10901722 | - | - |
| Rat Genome 230 2.0 Array | 1369073_at | - | - |
| Rat Genome 230 2.0 Array | 1369073_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1369073_at | - | - |
| Affymetrix HT Rat Focus Array | 1369073_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0700019527.rn.1 | TC0700002446.rn.1 | RTA TC |
| Rat Expression Set 230 | 1369073_PM_at | - | - |
| Rat Expression Set 230 | 1369073_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10901722 | - | - |
| Rat Genome U34 Set | U18374_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 20876655 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1367313 | - | - |
| RatRef-12 Expression BeadChip | ILMN_56919 | - | - |
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