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- Gene Symbol:
-
Clock - Gene Name:
- clock circadian regulator
- Gene Aliases:
- -
- Chromosome Location:
- Chr.14: 34446694 - 34502218 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Clock | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001289832.1 | NP_001276761.1 | 12 - 13 | 1203 | 112 | |
| NM_021856.2 | NP_068628.1 | 12 - 13 | 1203 | 112 | ||
| XM_006250869.2 | XP_006250931.1 | 12 - 13 | 1247 | 112 | ||
| XM_006250870.2 | XP_006250932.1 | 12 - 13 | 1247 | 112 | ||
| GenBank mRNA | AB019258.1 | - | 12 - 13 | 1203 | 112 | |
| AB019259.1 | - | 12 - 13 | 1203 | 112 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1400000399.rn.1Set Membership: |
Ambion siRNA available
Amplicon length greater than or equal to 101
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
DNA damage checkpoint
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
cellular response to DNA damage stimulus
signal transduction
spermatogenesis
circadian rhythm
entrainment of circadian clock
histone acetylation
circadian regulation of gene expression
regulation of hair cycle
proteasome-mediated ubiquitin-dependent protein catabolic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of inflammatory response
regulation of insulin secretion
positive regulation of NF-kappaB transcription factor activity
response to redox state
cellular response to ionizing radiation
regulation of type B pancreatic cell development
negative regulation of glucocorticoid receptor signaling pathway
RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
core promoter sequence-specific DNA binding
core promoter binding
transcriptional activator activity, RNA polymerase II transcription factor binding
DNA binding
transcription factor activity, sequence-specific DNA binding
histone acetyltransferase activity
signal transducer activity
chromatin DNA binding
sequence-specific DNA binding
protein dimerization activity
E-box binding
DNA damage checkpoint
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
cellular response to DNA damage stimulus
signal transduction
spermatogenesis
circadian rhythm
entrainment of circadian clock
histone acetylation
circadian regulation of gene expression
regulation of hair cycle
proteasome-mediated ubiquitin-dependent protein catabolic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of inflammatory response
regulation of insulin secretion
positive regulation of NF-kappaB transcription factor activity
response to redox state
cellular response to ionizing radiation
regulation of type B pancreatic cell development
negative regulation of glucocorticoid receptor signaling pathway
RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
core promoter sequence-specific DNA binding
core promoter binding
transcriptional activator activity, RNA polymerase II transcription factor binding
DNA binding
transcription factor activity, sequence-specific DNA binding
histone acetyltransferase activity
signal transducer activity
chromatin DNA binding
sequence-specific DNA binding
protein dimerization activity
E-box binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P147863 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P075337 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 364058 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 93829 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 484284 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 125652 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 280325 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 234750 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 739409 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 845370 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 223382 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 125982 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 212699 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 205225 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 75729 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 530950 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 812845 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 104661 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 8837 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 967028 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 371052 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 109584 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 656285 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 68070 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 673112 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 485578 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 529900 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 376709 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 612090 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 201136 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 790900 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 47018 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 19293 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 65582 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 130323 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 90654 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 1066 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P147863 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P075337 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P147863 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P075337 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P147863 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P075337 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P15473 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 69134 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 17769 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 15537 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10772264 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772251 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772266 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772250 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772258 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772263 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772252 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772267 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772268 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772269 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772256 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772260 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772254 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772265 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772261 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772255 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772262 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772257 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772270 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772253 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772271 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772259 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10772249 | - | - |
| Rat Genome 230 2.0 Array | 1369168_PM_a_at | - | - |
| Rat Genome 230 2.0 Array | 1369168_a_at | - | - |
| Affymetrix HT Rat Focus Array | 1369168_PM_a_at | - | - |
| Affymetrix HT Rat Focus Array | 1369168_a_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1400003148.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003124.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003134.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003126.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003137.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003133.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003138.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003152.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003145.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003130.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003131.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003128.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003153.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003132.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003140.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003143.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003149.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003127.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003129.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003146.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003147.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003135.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003136.rn.1 | TC1400000399.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1400003125.rn.1 | TC1400000399.rn.1 | RTA TC |
| Rat Expression Set 230 | 1369168_PM_a_at | - | - |
| Rat Expression Set 230 | 1369168_a_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10772249 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21658211 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1353787 | - | - |
| RatRef-12 Expression BeadChip | ILMN_48523 | - | - |
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