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          • › Search Tool
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          • › Rn00576694_m1
          See other CDX2 GE Assays ›
          Gene Symbol:
          Cdx2
          Gene Name:
          caudal type homeo box 2
          Gene Aliases:
          -
          Chromosome Location:
          Chr.12: 9464026 - 9470565 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00576694_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Cdx2
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_023963.1 NP_076453.1 1 - 2 651 89
          XM_008768999.1 XP_008767221.1 1 - 2 542 89
          GenBank mRNA AJ278466.1 - 1 - 2 651 89

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC1200000159.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length between 86 and 100 Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Cdx2

          Panther Classification:

          Molecular Function -

          homeodomain transcription factor

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          blood vessel development
          blastocyst development
          trophectodermal cell differentiation
          placenta development
          regulation of transcription from RNA polymerase II promoter
          pattern specification process
          positive regulation of cell proliferation
          endosome to lysosome transport
          anterior/posterior pattern specification
          cell differentiation
          somatic stem cell population maintenance
          establishment or maintenance of epithelial cell apical/basal polarity
          positive regulation of cell differentiation
          positive regulation of transcription, DNA-templated
          labyrinthine layer development
          RNA polymerase II distal enhancer sequence-specific DNA binding
          transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
          double-stranded DNA binding
          transcription factor activity, sequence-specific DNA binding
          transcription corepressor activity
          sequence-specific DNA binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P157804 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 789846 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 166158 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 564945 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 128174 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P157803 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P157803 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P157803 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_42_P655689 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 22027 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10756491 - -
          Affymetrix Rat Gene 1.0 ST Array 10756488 - -
          Affymetrix Rat Gene 1.0 ST Array 10756490 - -
          Affymetrix Rat Gene 1.0 ST Array 10756489 - -
          Affymetrix Rat Gene 1.1 ST Array 10756487 - -
          Rat Genome 230 2.0 Array 1387726_PM_at - -
          Rat Genome 230 2.0 Array 1387726_at - -
          Affymetrix HT Rat Focus Array 1387726_at - -
          Affymetrix HT Rat Focus Array 1387726_PM_at - -
          Affymetrix Rat Clariom S Assay PSR1200001131.rn.1 TC1200000159.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1200001129.rn.1 TC1200000159.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1200001130.rn.1 TC1200000159.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1200001136.rn.1 TC1200000159.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1200001135.rn.1 TC1200000159.rn.1 RTA TC
          Rat Expression Set 230 1387726_at - -
          Rat Expression Set 230 1387726_PM_at - -
          Affymetrix Rat Gene 1.0 ST Array 10756487 - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 20863565 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1368698 - -
          RatRef-12 Expression BeadChip ILMN_66195 - -

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