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- Gene Symbol:
-
Msh2 - Gene Name:
- mutS homolog 2
- Gene Aliases:
- -
- Chromosome Location:
- Chr.6: 11215951 - 11274916 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Msh2 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_031058.1 | NP_112320.1 | 4 - 5 | 794 | 64 | |
| GenBank mRNA | BC161846.1 | - | 4 - 5 | 810 | 9029023 | 64 |
| X93591.1 | - | 4 - 5 | 794 | 64 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0600001876.rn.1Set Membership: |
Ambion siRNA available
Amplicon length less than or equal to 70
Mammalian Gene Collection
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
meiotic mismatch repair
in utero embryonic development
somatic recombination of immunoglobulin genes involved in immune response
oxidative phosphorylation
DNA repair
mismatch repair
postreplication repair
double-strand break repair
meiotic gene conversion
cellular response to DNA damage stimulus
cell cycle arrest
germ cell development
spermatogenesis
determination of adult lifespan
male gonad development
intrinsic apoptotic signaling pathway in response to DNA damage
response to X-ray
response to UV-B
response to organic cyclic compound
somatic hypermutation of immunoglobulin genes
somatic recombination of immunoglobulin gene segments
B cell mediated immunity
B cell differentiation
intra-S DNA damage checkpoint
response to drug
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
response to amino acid
negative regulation of neuron apoptotic process
maintenance of DNA repeat elements
negative regulation of reciprocal meiotic recombination
isotype switching
negative regulation of DNA recombination
positive regulation of helicase activity
magnesium ion binding
four-way junction DNA binding
Y-form DNA binding
heteroduplex DNA loop binding
double-strand/single-strand DNA junction binding
DNA binding
damaged DNA binding
double-stranded DNA binding
single-stranded DNA binding
ATP binding
protein C-terminus binding
DNA-dependent ATPase activity
ATPase activity
centromeric DNA binding
enzyme binding
protein kinase binding
mismatched DNA binding
guanine/thymine mispair binding
single base insertion or deletion binding
dinucleotide insertion or deletion binding
single guanine insertion binding
single thymine insertion binding
dinucleotide repeat insertion binding
oxidized purine DNA binding
MutLalpha complex binding
protein homodimerization activity
ADP binding
meiotic mismatch repair
in utero embryonic development
somatic recombination of immunoglobulin genes involved in immune response
oxidative phosphorylation
DNA repair
mismatch repair
postreplication repair
double-strand break repair
meiotic gene conversion
cellular response to DNA damage stimulus
cell cycle arrest
germ cell development
spermatogenesis
determination of adult lifespan
male gonad development
intrinsic apoptotic signaling pathway in response to DNA damage
response to X-ray
response to UV-B
response to organic cyclic compound
somatic hypermutation of immunoglobulin genes
somatic recombination of immunoglobulin gene segments
B cell mediated immunity
B cell differentiation
intra-S DNA damage checkpoint
response to drug
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
response to amino acid
negative regulation of neuron apoptotic process
maintenance of DNA repeat elements
negative regulation of reciprocal meiotic recombination
isotype switching
negative regulation of DNA recombination
positive regulation of helicase activity
magnesium ion binding
four-way junction DNA binding
Y-form DNA binding
heteroduplex DNA loop binding
double-strand/single-strand DNA junction binding
DNA binding
damaged DNA binding
double-stranded DNA binding
single-stranded DNA binding
ATP binding
protein C-terminus binding
DNA-dependent ATPase activity
ATPase activity
centromeric DNA binding
enzyme binding
protein kinase binding
mismatched DNA binding
guanine/thymine mispair binding
single base insertion or deletion binding
dinucleotide insertion or deletion binding
single guanine insertion binding
single thymine insertion binding
dinucleotide repeat insertion binding
oxidized purine DNA binding
MutLalpha complex binding
protein homodimerization activity
ADP binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P217604 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 689861 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 410184 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 198742 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 185418 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 703980 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 189129 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 926347 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 234370 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 574003 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 741447 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 325020 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 629994 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 843154 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 614240 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 662504 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 656025 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 72103 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 74141 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 768531 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 634843 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 713455 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 436211 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 501285 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 551904 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 969049 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 670352 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 12001 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 911545 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 141715 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 406810 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 614895 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 172693 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 529454 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 485479 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 958653 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 200324 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 291360 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 318831 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 459118 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 123553 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 33945 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 91096 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 97533 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 43506 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 59572 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P217604 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P217604 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P217604 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P217604 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 700541096 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 84654 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 65602 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 51870 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 77616 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 700541096 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10882824 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882817 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882813 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882816 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882815 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882821 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882819 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882826 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882814 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882820 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882823 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882827 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882822 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882818 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882825 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882828 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10882812 | - | - |
| Rat Genome 230 2.0 Array | 1368002_at | - | - |
| Rat Genome 230 2.0 Array | 1368002_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1368002_at | - | - |
| Affymetrix HT Rat Focus Array | 1368002_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0600013317.rn.1 | TC0600001876.rn.1 | RTA TC |
| Rat Expression Set 230 | 1368002_at | - | - |
| Rat Expression Set 230 | 1368002_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10882812 | - | - |
| Rat Genome U34 Set | rc_AA874919_at | - | - |
| Rat Genome U34 Set | X93591cds_at | - | - |
| Rat Genome U34 Set | rc_AA874919_g_at | - | - |
| Rat Genome U34 Set | rc_AA874919_at | - | - |
| Rat Genome U34 Set | X93591cds_at | - | - |
| Rat Genome U34 Set | rc_AA874919_g_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 20949416 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1365869 | - | - |
| RatRef-12 Expression BeadChip | ILMN_51125 | - | - |
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