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          • Home
          • › Search Tool
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          • › Rn00580664_m1
          See other CDKN2A GE Assays ›
          Gene Symbol:
          Cdkn2a
          Gene Name:
          cyclin-dependent kinase inhibitor 2A
          Gene Aliases:
          Arf, INK4A, MTS1, p16, p16Cdkn2a, p19ARF
          Chromosome Location:
          Chr.5: 107823323 - 107832405 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00580664_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Cdkn2a
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_031550.1 NP_113738.1 2 - 3 486 78
          GenBank mRNA AF474974.1 - 527 78
          AF474975.1 - 527 78
          AF474976.1 - 2 - 3 462 78
          AF474977.1 - 2 - 3 453 78
          AY679727.1 - 527 78
          AY679728.1 - 2 - 3 462 78
          L81167.1 - 2 - 3 486 78

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0500003113.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length between 71 and 85 3' Most Recommended Assay Rattus norvegicus Rat Tumor Metastasis Panel 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Cdkn2a

          Gene Ontology Categories:

          Function(s) Process(es)

          regulation of cyclin-dependent protein serine/threonine kinase activity
          G1/S transition of mitotic cell cycle
          protein polyubiquitination
          negative regulation of cell-matrix adhesion
          transcription, DNA-templated
          regulation of transcription, DNA-templated
          rRNA processing
          negative regulation of protein kinase activity
          apoptotic process
          activation of cysteine-type endopeptidase activity involved in apoptotic process
          cell cycle arrest
          Ras protein signal transduction
          aging
          cell aging
          negative regulation of cell proliferation
          epidermis development
          apoptotic mitochondrial changes
          rRNA transcription
          response to organic substance
          response to organonitrogen compound
          regulation of G2/M transition of mitotic cell cycle
          regulation of gene expression
          response to organic cyclic compound
          cerebellum development
          negative regulation of cell growth
          negative regulation of B cell proliferation
          regulation of protein stability
          protein destabilization
          negative regulation of NF-kappaB transcription factor activity
          negative regulation of protein binding
          negative regulation of immature T cell proliferation in thymus
          positive regulation of protein sumoylation
          negative regulation of mammary gland epithelial cell proliferation
          positive regulation of smooth muscle cell apoptotic process
          somatic stem cell population maintenance
          senescence-associated heterochromatin focus assembly
          negative regulation of phosphorylation
          response to drug
          glucose homeostasis
          positive regulation of apoptotic process
          positive regulation of DNA damage response, signal transduction by p53 class mediator
          negative regulation of cyclin-dependent protein serine/threonine kinase activity
          negative regulation of cell cycle
          negative regulation of transcription, DNA-templated
          positive regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          regulation of nucleocytoplasmic transport
          regulation of protein export from nucleus
          somatic stem cell division
          protein stabilization
          positive regulation of sequence-specific DNA binding transcription factor activity
          negative regulation of ubiquitin-protein transferase activity
          positive regulation of apoptotic process involved in mammary gland involution
          cellular response to hydrogen peroxide
          protein K63-linked ubiquitination
          positive regulation of cell cycle arrest
          cellular senescence
          replicative senescence
          positive regulation of protein localization to nucleus
          positive regulation of signal transduction by p53 class mediator
          regulation of apoptotic DNA fragmentation
          negative regulation of proteolysis involved in cellular protein catabolic process
          negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
          positive regulation of macrophage apoptotic process
          positive regulation of cellular senescence
          p53 binding
          DNA binding
          transcription factor activity, sequence-specific DNA binding
          cyclin-dependent protein serine/threonine kinase inhibitor activity
          transcription factor binding
          protein kinase binding
          poly(A) RNA binding
          NF-kappaB binding
          ubiquitin-protein transferase inhibitor activity
          MDM2/MDM4 family protein binding

          MicroArray Probes:

          Agilent Affymetrix ABI

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P071770 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 680525 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 878020 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 538553 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 954791 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 810968 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 115413 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P071770 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P071770 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P071770 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P395885 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 95542 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10877999 - -
          Affymetrix Rat Gene 1.0 ST Array 10878000 - -
          Affymetrix Rat Gene 1.0 ST Array 10877998 - -
          Affymetrix Rat Gene 1.1 ST Array 10877997 - -
          Rat Genome 230 2.0 Array 1369194_PM_a_at - -
          Rat Genome 230 2.0 Array 1369194_a_at - -
          Affymetrix HT Rat Focus Array 1369194_PM_a_at - -
          Affymetrix HT Rat Focus Array 1369194_a_at - -
          Affymetrix Rat Clariom S Assay PSR0500022763.rn.1 TC0500003113.rn.1 RTA TC
          Rat Expression Set 230 1369194_a_at - -
          Rat Expression Set 230 1369194_PM_a_at - -
          Affymetrix Rat Gene 1.0 ST Array 10877997 - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21089952 - -

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