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- Gene Symbol:
-
Shank1 - Gene Name:
- SH3 and multiple ankyrin repeat domains 1
- Gene Aliases:
- Shank1a, Spank1, Sstrip
- Chromosome Location:
- Chr.1: 100297157 - 100344377 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Shank1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_031751.2 | NP_113939.2 | 6 - 7 | 881 | 95 | |
| XM_008759414.1 | XP_008757636.1 | 5 - 6 | 948 | 95 | ||
| XM_008759415.1 | XP_008757637.1 | 5 - 6 | 948 | 95 | ||
| XM_008759416.1 | XP_008757638.1 | 5 - 6 | 948 | 95 | ||
| XM_008759417.1 | XP_008757639.1 | 5 - 6 | 948 | 95 | ||
| GenBank mRNA | AF102855.2 | - | 5 - 6 | 793 | 95 | |
| AF131951.1 | - | 5 - 6 | 802 | 95 | ||
| AF159046.1 | - | 6 - 7 | 881 | 95 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0100001445.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 86 and 100
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
protein complex assembly
cytoskeletal anchoring at plasma membrane
long-term memory
associative learning
adult behavior
negative regulation of actin filament bundle assembly
social behavior
protein localization to synapse
olfactory behavior
habituation
neuromuscular process controlling balance
determination of affect
righting reflex
synapse maturation
dendritic spine morphogenesis
positive regulation of dendritic spine development
vocalization behavior
regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
positive regulation of excitatory postsynaptic potential
protein binding
protein C-terminus binding
SH3 domain binding
receptor signaling complex scaffold activity
GKAP/Homer scaffold activity
somatostatin receptor binding
protein complex binding
ionotropic glutamate receptor binding
identical protein binding
ankyrin repeat binding
scaffold protein binding
protein complex assembly
cytoskeletal anchoring at plasma membrane
long-term memory
associative learning
adult behavior
negative regulation of actin filament bundle assembly
social behavior
protein localization to synapse
olfactory behavior
habituation
neuromuscular process controlling balance
determination of affect
righting reflex
synapse maturation
dendritic spine morphogenesis
positive regulation of dendritic spine development
vocalization behavior
regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
positive regulation of excitatory postsynaptic potential
protein binding
protein C-terminus binding
SH3 domain binding
receptor signaling complex scaffold activity
GKAP/Homer scaffold activity
somatostatin receptor binding
protein complex binding
ionotropic glutamate receptor binding
identical protein binding
ankyrin repeat binding
scaffold protein binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P102990 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P102996 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P059993 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 734453 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 35738 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 823792 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 758696 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 739854 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 924280 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 927238 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 101426 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 319447 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 664174 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 389589 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 103935 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 716141 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 238850 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 199907 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 227172 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 524660 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 712726 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 816898 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 938091 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 150073 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 935870 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 41836 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 150828 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 687260 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 527769 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 564757 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 297341 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 653889 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 236823 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 741220 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 75417 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 13577 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 949616 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 53936 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 19254 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 5209 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 166160 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 112027 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 83652 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 159201 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P102996 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P102990 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P059993 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P102990 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P102996 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P059993 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P102996 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P102990 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P059993 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P289284 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 702121315 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 702164808 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 700500978 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 33007 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 99144 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 67557 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 22254 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 702121315 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 702164808 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 700500978 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10706517 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706530 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706543 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706526 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706516 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706527 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706536 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706544 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706538 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706542 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706537 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706541 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706529 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706518 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706522 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706535 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706521 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706520 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706534 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706539 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706540 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706531 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706519 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706525 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706524 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706528 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706523 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10706515 | - | - |
| Rat Genome 230 2.0 Array | 1378926_at | - | - |
| Rat Genome 230 2.0 Array | 1368445_at | - | - |
| Rat Genome 230 2.0 Array | 1387192_at | - | - |
| Rat Genome 230 2.0 Array | 1396040_at | - | - |
| Rat Genome 230 2.0 Array | 1396040_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1371792_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1371792_at | - | - |
| Rat Genome 230 2.0 Array | 1368445_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1378926_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1387192_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1387192_at | - | - |
| Affymetrix HT Rat Focus Array | 1387192_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1368445_at | - | - |
| Affymetrix HT Rat Focus Array | 1368445_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1396040_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1396040_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0100011131.rn.1 | TC0100001445.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0100011132.rn.1 | TC0100001445.rn.1 | RTA TC |
| Rat Expression Set 230 | 1387192_at | - | - |
| Rat Expression Set 230 | 1368445_PM_at | - | - |
| Rat Expression Set 230 | 1387192_PM_at | - | - |
| Rat Expression Set 230 | 1368445_at | - | - |
| Rat Expression Set 230 | 1396040_at | - | - |
| Rat Expression Set 230 | 1396040_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10706515 | - | - |
| Rat Genome U34 Set | AF102855_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 22002999 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1373188 | - | - |
| RatRef-12 Expression BeadChip | ILMN_67812 | - | - |
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