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          • › Rn00586428_m1
          See other NKX2-5 GE Assays ›
          Gene Symbol:
          Nkx2-5
          Gene Name:
          NK2 homeobox 5
          Gene Aliases:
          Csx, Nkx2.5
          Chromosome Location:
          Chr.10: 16635989 - 16638758 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00586428_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
          Your Price
          Online offer:
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Nkx2-5
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_053651.1 NP_446103.1 1 - 2 419 67
          GenBank mRNA AF006664.1 - 1 - 2 419 67

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC1000000301.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length less than or equal to 70 3' Most Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Nkx2-5

          Panther Classification:

          Molecular Function -

          homeodomain transcription factor

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          vasculogenesis
          heart looping
          heart morphogenesis
          outflow tract septum morphogenesis
          outflow tract morphogenesis
          cardiac conduction system development
          atrioventricular node development
          bundle of His development
          Purkinje myocyte differentiation
          cardiac ventricle morphogenesis
          cardiac ventricle formation
          right ventricular cardiac muscle tissue morphogenesis
          ventricular trabecula myocardium morphogenesis
          apoptotic process involved in heart morphogenesis
          septum secundum development
          proepicardium development
          pulmonary myocardium development
          regulation of transcription from RNA polymerase II promoter
          transcription from RNA polymerase II promoter
          heart development
          adult heart development
          positive regulation of cell proliferation
          positive regulation of gene expression
          negative regulation of cardiac muscle cell apoptotic process
          positive regulation of transcription via serum response element binding
          positive regulation of sodium ion transport
          negative regulation of myotube differentiation
          hemopoiesis
          cell differentiation
          BMP signaling pathway
          thyroid gland development
          response to estradiol
          embryonic heart tube development
          negative regulation of apoptotic process
          sarcomere organization
          positive regulation of neuron differentiation
          positive regulation of heart contraction
          positive regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          spleen development
          cardiac muscle tissue development
          positive regulation of cardioblast differentiation
          ventricular cardiac myofibril assembly
          cardiac muscle cell differentiation
          cardiac muscle tissue morphogenesis
          regulation of cardiac muscle contraction
          pharyngeal system development
          cardiac muscle cell proliferation
          regulation of cardiac muscle cell proliferation
          heart contraction
          cardiac muscle contraction
          canonical Wnt signaling pathway
          positive regulation of transcription initiation from RNA polymerase II promoter
          heart trabecula formation
          ventricular septum morphogenesis
          atrial septum morphogenesis
          atrioventricular node cell development
          atrioventricular node cell fate commitment
          embryonic heart tube left/right pattern formation
          cellular response to growth factor stimulus
          cardiovascular system development
          negative regulation of canonical Wnt signaling pathway
          positive regulation of voltage-gated calcium channel activity
          RNA polymerase II core promoter proximal region sequence-specific DNA binding
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          RNA polymerase II transcription cofactor activity
          transcriptional activator activity, RNA polymerase II transcription factor binding
          DNA binding
          chromatin binding
          transcription factor activity, sequence-specific DNA binding
          transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
          protein binding
          transcription factor binding
          serum response element binding
          protein homodimerization activity
          histone deacetylase binding
          sequence-specific DNA binding
          transcription regulatory region DNA binding
          protein heterodimerization activity

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P096244 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 540570 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P096244 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P096244 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P096244 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_43_P12886 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10732651 - -
          Affymetrix Rat Gene 1.0 ST Array 10732650 - -
          Affymetrix Rat Gene 1.1 ST Array 10732649 - -
          Rat Genome 230 2.0 Array 1369987_at - -
          Rat Genome 230 2.0 Array 1369987_PM_at - -
          Affymetrix HT Rat Focus Array 1369987_at - -
          Affymetrix HT Rat Focus Array 1369987_PM_at - -
          Affymetrix Rat Clariom S Assay PSR1000003002.rn.1 TC1000000301.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1000003003.rn.1 TC1000000301.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1000003001.rn.1 TC1000000301.rn.1 RTA TC
          Rat Expression Set 230 1369987_at - -
          Rat Expression Set 230 1369987_PM_at - -
          Affymetrix Rat Gene 1.0 ST Array 10732649 - -
          Rat Genome U34 Set AF006664_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21800015 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1362482 - -
          RatRef-12 Expression BeadChip ILMN_62459 - -

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