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          • Home
          • › Search Tool
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          • › Rn00587316_m1
          See other IFT172 GE Assays ›
          Gene Symbol:
          Ift172
          Gene Name:
          intraflagellar transport 172
          Gene Aliases:
          Slb
          Chromosome Location:
          Chr.6: 26390686 - 26485459 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00587316_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Ift172
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_053792.1 NP_446244.1 35 - 36 4039 60
          GenBank mRNA AF226993.1 - 35 - 36 4039 60

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0600000279.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length less than or equal to 70 Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Ift172

          Panther Classification:

          Molecular Function -

          structural protein

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          neural tube formation
          neural tube closure
          heart looping
          Notch signaling pathway
          smoothened signaling pathway
          multicellular organism development
          determination of left/right symmetry
          brain development
          heart development
          epidermis development
          regulation of smoothened signaling pathway
          dorsal/ventral pattern formation
          protein processing
          spinal cord motor neuron differentiation
          neural tube development
          cytoplasmic microtubule organization
          cilium assembly
          positive regulation of smoothened signaling pathway
          negative regulation of epithelial cell proliferation
          palate development
          limb development
          cilium morphogenesis
          bone development
          hindgut development
          left/right axis specification
          transcription factor binding

          MicroArray Probes:

          Agilent Affymetrix ABI

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_42_P538617 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P538617 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P538617 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_42_P538617 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_42_P538617 - -
          Matsumoto (Agilent Rat cDNA Microarray G4105A) 701192653 - -
          Agilent Rat cDNA Microarray (G4105A) 701192653 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10940552 - -
          Affymetrix Rat Gene 1.1 ST Array 10940552 - -
          Rat Genome 230 2.0 Array 1387046_PM_at - -
          Rat Genome 230 2.0 Array 1387046_at - -
          Affymetrix HT Rat Focus Array 1387046_PM_at - -
          Affymetrix HT Rat Focus Array 1387046_at - -
          Affymetrix Rat Clariom S Assay PSR0600001733.rn.1 TC0600000279.rn.1 RTA TC
          Rat Expression Set 230 1387046_PM_at - -
          Rat Expression Set 230 1387046_at - -
          Affymetrix Rat Gene 1.0 ST Array 10940552 - -
          Rat Genome U34 Set rc_AI070127_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21961246 - -

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