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- Gene Symbol:
-
Atp2c1 - Gene Name:
- ATPase, Ca++ transporting, type 2C, member 1
- Gene Aliases:
- Spca1
- Chromosome Location:
- Chr.8: 113953959 - 114039965 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Atp2c1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_131907.2 | NP_571982.2 | 5 - 6 | 791 | 59 | |
| GenBank mRNA | BC086994.1 | - | 5 - 6 | 791 | 7106233 | 59 |
| M93017.1 | - | 5 - 6 | 502 | 59 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0800003301.rn.1Set Membership: |
Ambion siRNA available
Amplicon length less than or equal to 70
Ion Channel
Transporter
Mammalian Gene Collection
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
calcium ion transport
manganese ion transport
cellular calcium ion homeostasis
signal transduction
metabolic process
epidermis development
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
cellular manganese ion homeostasis
actin cytoskeleton reorganization
Golgi calcium ion homeostasis
Golgi calcium ion transport
positive regulation of I-kappaB kinase/NF-kappaB signaling
calcium ion import
calcium ion transmembrane transport
manganese ion transmembrane transport
signal transducer activity
calcium-transporting ATPase activity
calcium ion binding
ATP binding
manganese-transporting ATPase activity
manganese ion binding
metal ion binding
calcium ion transport
manganese ion transport
cellular calcium ion homeostasis
signal transduction
metabolic process
epidermis development
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
cellular manganese ion homeostasis
actin cytoskeleton reorganization
Golgi calcium ion homeostasis
Golgi calcium ion transport
positive regulation of I-kappaB kinase/NF-kappaB signaling
calcium ion import
calcium ion transmembrane transport
manganese ion transmembrane transport
signal transducer activity
calcium-transporting ATPase activity
calcium ion binding
ATP binding
manganese-transporting ATPase activity
manganese ion binding
metal ion binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P506069 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_43_P13146 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 221351 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 695634 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 624239 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 291107 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 329127 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 820740 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 84429 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 855303 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 364284 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 718981 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 818702 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 822321 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 720269 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 798689 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 303103 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 154408 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 559486 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 941154 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 57313 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 112055 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 902126 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 292716 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 544496 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 663096 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 172511 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 816952 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 458621 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 266635 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 960402 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 846352 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 737527 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 300342 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 877651 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 659834 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 164942 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 703029 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 848970 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 379743 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 575861 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 381455 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 404159 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 371513 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 478613 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 764143 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 610061 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 384986 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 80830 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 337540 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 205228 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 682644 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 65120 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 971988 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 137891 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 540743 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 316129 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 399979 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 873868 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 1223 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 293506 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 694339 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 64222 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 528003 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 647293 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 618794 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 640355 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 123317 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 146934 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 91422 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 3547 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 6896 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 87329 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 139183 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 156265 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 79378 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 57420 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 56383 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 93653 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_43_P13146 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P506069 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P506069 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_43_P13146 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P506069 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_43_P13146 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P13146 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P506069 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 9904 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 1931 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 64671 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 75044 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 100096 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10919843 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919839 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919853 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919836 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919837 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919834 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919835 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919861 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919851 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919833 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919858 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919850 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919855 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919860 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919845 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919849 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919841 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919852 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919842 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919848 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919847 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919838 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919840 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919856 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919857 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919846 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919844 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919859 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10912756 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919854 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10919830 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10912749 | - | - |
| Rat Genome 230 2.0 Array | 1371134_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1377386_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1387126_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1377386_at | - | - |
| Rat Genome 230 2.0 Array | 1387126_at | - | - |
| Rat Genome 230 2.0 Array | 1371134_at | - | - |
| Affymetrix HT Rat Focus Array | 1387126_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1371134_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1377386_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1371134_at | - | - |
| Affymetrix HT Rat Focus Array | 1387126_at | - | - |
| Affymetrix HT Rat Focus Array | 1377386_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0800026377.rn.1 | TC0800003301.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0800026378.rn.1 | TC0800003301.rn.1 | RTA TC |
| Rat Expression Set 230 | 1377386_PM_at | - | - |
| Rat Expression Set 230 | 1387126_PM_at | - | - |
| Rat Expression Set 230 | 1377386_at | - | - |
| Rat Expression Set 230 | 1387126_at | - | - |
| Rat Expression Set 230 | 1371134_PM_at | - | - |
| Rat Expression Set 230 | 1371134_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10919830 | - | - |
| Rat Genome U34 Set | M93017_at | - | - |
| Rat Genome U34 Set | rc_AA945848_s_at | - | - |
| Rat Genome U34 Set | rc_AI009173_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21590286 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1357443 | - | - |
| RatRef-12 Expression BeadChip | ILMN_69117 | - | - |
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