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- Gene Symbol:
-
Scn9a - Gene Name:
- sodium channel, voltage-gated, type IX, alpha subunit
- Gene Aliases:
- Nav1.7, PN1, Scn2a
- Chromosome Location:
- Chr.3: 52583953 - 52664209 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Scn9a | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_133289.1 | NP_579823.1 | 9 - 10 | 1313 | 86 | |
| GenBank mRNA | AF000368.1 | - | 9 - 10 | 1313 | 86 | |
| U79568.1 | - | 9 - 10 | 1313 | 86 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0300003231.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 86 and 100
Ion Channel
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
inflammatory response
response to toxic substance
post-embryonic development
neuronal action potential
regulation of ion transmembrane transport
sodium ion transmembrane transport
rhythmic excitation
behavioral response to pain
membrane depolarization during action potential
voltage-gated sodium channel activity
sodium ion binding
inflammatory response
response to toxic substance
post-embryonic development
neuronal action potential
regulation of ion transmembrane transport
sodium ion transmembrane transport
rhythmic excitation
behavioral response to pain
membrane depolarization during action potential
voltage-gated sodium channel activity
sodium ion binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P386383 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 929324 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 903821 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 788936 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 118284 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 546869 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 868475 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 165725 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 734674 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 138479 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 6768 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 815422 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 481354 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 501267 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 553215 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 477605 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 568065 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 296425 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 822415 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 769614 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 764081 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 858025 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 40681 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 110232 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 120342 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 576926 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 773155 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 353288 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 41152 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 678342 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 828193 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 854704 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 769739 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 375369 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 649395 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 218559 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 565544 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 282454 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 452312 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 30549 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 86781 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 800702 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 140410 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 449336 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 860003 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 103894 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 858169 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 13338 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 407221 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 497198 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 245123 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 80396 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 138126 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 569902 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 132920 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 712679 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 162810 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 869231 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 676972 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 706717 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 429341 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 774255 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 365837 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 580275 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 354657 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 16462 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 654284 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 390549 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 825 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 169010 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 166452 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 98172 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 70385 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 130317 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 136681 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 148189 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 36325 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 17198 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 31510 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 113406 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 136711 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P386383 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P386383 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P386383 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P386383 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P113806 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 25481 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 11871 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 24131 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 10329 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 2068 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 52664 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10845906 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845903 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845908 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845910 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845892 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845916 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845891 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845898 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845913 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845895 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845893 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845901 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845897 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845909 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845904 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845905 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845896 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845914 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845900 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845899 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845911 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845894 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845912 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845915 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845907 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845902 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10845890 | - | - |
| Rat Genome 230 2.0 Array | 1368539_at | - | - |
| Rat Genome 230 2.0 Array | 1368539_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1368539_at | - | - |
| Affymetrix HT Rat Focus Array | 1368539_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0300025124.rn.1 | TC0300003231.rn.1 | RTA TC |
| Rat Expression Set 230 | 1368539_PM_at | - | - |
| Rat Expression Set 230 | 1368539_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10845890 | - | - |
| Rat Genome U34 Set | AF000368_at | - | - |
| Rat Genome U34 Set | U79568_s_at | - | - |
| Rat Genome U34 Set | U79568_s_at | - | - |
| Rat Genome U34 Set | AF000368_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21871380 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1360284 | - | - |
| RatRef-12 Expression BeadChip | ILMN_55144 | - | - |
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