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- Gene Symbol:
-
Col5a1 - Gene Name:
- collagen, type V, alpha 1
- Gene Aliases:
- -
- Chromosome Location:
- Chr.3: 6430183 - 6581010 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Col5a1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_134452.1 | NP_604447.1 | 65 - 66 | 5381 | 61 | |
| XM_006233873.2 | XP_006233935.1 | 65 - 66 | 5787 | 61 | ||
| GenBank mRNA | AF272662.1 | - | 65 - 66 | 5381 | 61 | |
| AJ005394.1 | - | 4 - 5 | 457 | 61 | ||
| FQ233333.1 | - | 5 - 6 | 721 | 61 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0300000155.rn.1Set Membership: |
Ambion siRNA available
Amplicon length less than or equal to 70
3' Most
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
blood vessel development
heart morphogenesis
cell adhesion
biological_process
cell migration
collagen fibril organization
collagen biosynthetic process
wound healing, spreading of epidermal cells
tendon development
extracellular fibril organization
skin development
integrin biosynthetic process
eye morphogenesis
regulation of cellular component organization
negative regulation of endodermal cell differentiation
extracellular matrix structural constituent
heparin binding
proteoglycan binding
platelet-derived growth factor binding
blood vessel development
heart morphogenesis
cell adhesion
biological_process
cell migration
collagen fibril organization
collagen biosynthetic process
wound healing, spreading of epidermal cells
tendon development
extracellular fibril organization
skin development
integrin biosynthetic process
eye morphogenesis
regulation of cellular component organization
negative regulation of endodermal cell differentiation
extracellular matrix structural constituent
heparin binding
proteoglycan binding
platelet-derived growth factor binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P009097 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 472411 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 35048 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 55835 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 575429 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 145095 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 118121 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 212913 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 468110 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 839642 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 219011 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 730811 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 949975 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 627205 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 434503 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 486769 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 14581 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 587426 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 607666 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 470491 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 82086 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 174130 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 242518 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 363476 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 169011 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 226188 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 604669 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 546854 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 130929 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 290919 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 482004 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 34676 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 25216 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 520886 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 6136 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 819553 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 929065 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 677484 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 611419 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 407104 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 383629 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 817906 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 366915 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 527610 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 393987 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 819082 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 394147 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 350786 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 335092 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 185628 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 3736 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 803638 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 412516 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 251890 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 82943 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 559552 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 248021 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 423348 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 967943 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 673992 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 378841 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 608668 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 21192 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 306894 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 262986 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 393598 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 909530 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 25868 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 244864 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 390357 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 234410 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 565228 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 460296 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 198956 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 261903 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 973758 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 546988 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 216628 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 10154 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 339066 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 127597 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 462777 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 468248 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 150546 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 262253 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 732987 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 224751 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 863948 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 211589 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 339375 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 743967 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 882760 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 303499 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 387938 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 560643 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 677981 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 499960 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 786927 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 668818 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 905477 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 640192 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 612632 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 513117 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 548371 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 397874 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 355950 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 123371 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 238412 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 785064 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 486054 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 120596 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 332912 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 99338 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 104131 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 81278 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 45709 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 37628 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 84360 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 48371 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 66483 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 74905 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 116953 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 92572 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 138125 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 148339 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 131024 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 44033 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 33079 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 137837 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P009097 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P009097 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P009097 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P196079 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P13273 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 700186920 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 18822 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 91211 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 102997 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 33875 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 40400 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 50243 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 30482 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 102151 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 19365 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 76797 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 15803 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 700186920 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10834786 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834737 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834755 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834749 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834780 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834773 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834781 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834769 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834750 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834733 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834738 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834779 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834759 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834778 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834795 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834776 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834748 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834777 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834774 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834782 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834739 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834762 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834740 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834760 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834746 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834751 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834757 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834763 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834770 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834752 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834753 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834747 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834734 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834743 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834766 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834783 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834772 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834787 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834735 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834771 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834789 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834756 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834788 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834758 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834754 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834797 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834742 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834792 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834798 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834784 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834736 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834765 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834796 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834794 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834767 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834775 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834791 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834768 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834793 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834732 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834785 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834790 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10834731 | - | - |
| Rat Genome 230 2.0 Array | 1369955_at | - | - |
| Rat Genome 230 2.0 Array | 1376099_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1369955_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1376099_at | - | - |
| Affymetrix HT Rat Focus Array | 1376099_at | - | - |
| Affymetrix HT Rat Focus Array | 1376099_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1369955_at | - | - |
| Affymetrix HT Rat Focus Array | 1369955_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0300001475.rn.1 | TC0300000155.rn.1 | RTA TC |
| Rat Expression Set 230 | 1369955_at | - | - |
| Rat Expression Set 230 | 1376099_at | - | - |
| Rat Expression Set 230 | 1369955_PM_at | - | - |
| Rat Expression Set 230 | 1376099_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834731 | - | - |
| Rat Genome U34 Set | rc_AA859757_at | - | - |
| Rat Genome U34 Set | rc_AA859757_g_at | - | - |
| Rat Genome U34 Set | AJ005394_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21396640 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1353887 | - | - |
| RatRef-12 Expression BeadChip | ILMN_50151 | - | - |
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