Assay Details

Gene Symbol: Cd44
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012924.2	NP_037056.2	16 - 17	2100		71
	XM_006234627.2	XP_006234689.1	13 - 14	1873		71
	XM_006234629.2	XP_006234691.1	11 - 12	1639		71
	XM_006234631.2	XP_006234693.1	6 - 7	971		71
	XM_008762055.1	XP_008760277.1	12 - 13	1782		71
	XM_008762056.1	XP_008760278.1	11 - 12	1642		71
	XM_008762057.1	XP_008760279.1	10 - 11	1550		71
	XM_008762058.1	XP_008760280.1	9 - 10	1346		71
	XM_008762059.1	XP_008760281.1	16 - 17	2237		71
GenBank mRNA	AF065147.1	-	6 - 7	764		71
	AF295360.1	-	2 - 3	197		71
	AF295361.1	-	2 - 3	194		71
	AF295362.1	-	2 - 3	197		71
	BC061531.1	-	6 - 7	856		71
	BC085703.1	-	6 - 7	882		71
	BC107949.1	-	6 - 7	837		71
	BC127485.1	-	6 - 7	835		71
	FQ234376.1	-	6 - 7	852		71
	M61875.1	-	6 - 7	852		71
	U46957.1	-	6 - 7	764		71
	U52179.1	-	6 - 7	763		71
	U96138.1	-	16 - 17	2100		71

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300003762.rn.1

Set Membership:

Ambion siRNA available

Amplicon length between 71 and 85

Apoptosis

Mammalian Gene Collection

Recommended Assay

Rattus norvegicus

Rat Tumor Metastasis Panel

1700

Inventoried

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cd44

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P080817	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P130999	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P280765	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P130995	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	166303	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	145856	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	37814	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	868388	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	148387	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	573269	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	313388	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	702683	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	160677	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	914448	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	295827	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	865313	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	347498	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	590946	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	377477	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	640775	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	191313	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	237970	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	59146	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	828699	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	6751	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	973164	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	252487	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	348968	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	535950	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	848300	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	202420	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	885050	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	928159	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	706661	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	441062	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	856810	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	83121	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	297452	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	639195	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	559102	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	557277	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	410710	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	368672	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	862681	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	169233	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	137761	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	897546	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	345043	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	653449	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	882839	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	360642	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	907080	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	561435	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	752223	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	892266	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	62297	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	303374	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	41929	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	334614	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	939616	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	634623	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	256579	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	614160	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	362589	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	753659	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	105488	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	489451	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	141499	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	128759	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	788250	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	178999	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	230860	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	152638	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	150574	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	70774	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	149334	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	110488	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	99326	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	150024	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	130211	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	173706	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P280765	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130999	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130995	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P080817	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P280765	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130999	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130995	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P080817	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P280765	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P130995	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P080817	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P130999	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P11621	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P491308	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700813109	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700180893	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	76427	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	59946	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	28159	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	80988	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	76776	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	17782	-	-
Agilent Rat cDNA Microarray (G4105A)	700180893	-	-
Agilent Rat cDNA Microarray (G4105A)	700813109	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10847770	-	-
Affymetrix Rat Gene 1.0 ST Array	10847764	-	-
Affymetrix Rat Gene 1.0 ST Array	10847768	-	-
Affymetrix Rat Gene 1.0 ST Array	10847775	-	-
Affymetrix Rat Gene 1.0 ST Array	10847780	-	-
Affymetrix Rat Gene 1.0 ST Array	10847773	-	-
Affymetrix Rat Gene 1.0 ST Array	10847781	-	-
Affymetrix Rat Gene 1.0 ST Array	10847766	-	-
Affymetrix Rat Gene 1.0 ST Array	10847765	-	-
Affymetrix Rat Gene 1.0 ST Array	10847785	-	-
Affymetrix Rat Gene 1.0 ST Array	10847782	-	-
Affymetrix Rat Gene 1.0 ST Array	10847777	-	-
Affymetrix Rat Gene 1.0 ST Array	10847771	-	-
Affymetrix Rat Gene 1.0 ST Array	10847769	-	-
Affymetrix Rat Gene 1.0 ST Array	10847778	-	-
Affymetrix Rat Gene 1.0 ST Array	10847762	-	-
Affymetrix Rat Gene 1.0 ST Array	10847763	-	-
Affymetrix Rat Gene 1.0 ST Array	10847779	-	-
Affymetrix Rat Gene 1.0 ST Array	10847776	-	-
Affymetrix Rat Gene 1.0 ST Array	10847772	-	-
Affymetrix Rat Gene 1.0 ST Array	10847767	-	-
Affymetrix Rat Gene 1.0 ST Array	10847784	-	-
Affymetrix Rat Gene 1.0 ST Array	10847783	-	-
Affymetrix Rat Gene 1.0 ST Array	10847774	-	-
Affymetrix Rat Gene 1.1 ST Array	10847761	-	-
Rat Genome 230 2.0 Array	1368921_PM_a_at	-	-
Rat Genome 230 2.0 Array	1390659_at	-	-
Rat Genome 230 2.0 Array	1368921_a_at	-	-
Rat Genome 230 2.0 Array	1387952_a_at	-	-
Rat Genome 230 2.0 Array	1387952_PM_a_at	-	-
Rat Genome 230 2.0 Array	1390659_PM_at	-	-
Affymetrix HT Rat Focus Array	1387952_a_at	-	-
Affymetrix HT Rat Focus Array	1368921_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1368921_a_at	-	-
Affymetrix HT Rat Focus Array	1387952_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300028579.rn.1	TC0300003762.rn.1	RTA TC
Rat Expression Set 230	1387952_PM_a_at	-	-
Rat Expression Set 230	1368921_a_at	-	-
Rat Expression Set 230	1387952_a_at	-	-
Rat Expression Set 230	1368921_PM_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10847761	-	-
Rat Genome U34 Set	M61875_s_at	-	-
Rat Genome U34 Set	A30543cds_s_at	-	-
Rat Genome U34 Set	AF014365_i_at	-	-
Rat Genome U34 Set	AF014365_s_at	-	-
Rat Genome U34 Set	AF014365_s_at	-	-
Rat Genome U34 Set	AF014365_i_at	-	-
Rat Genome U34 Set	M61875_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21671423	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1352966	-	-
RatRef-12 Expression BeadChip	ILMN_52850	-	-

Availability	Inventoried
Catalog #	4331182
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System Message

Genomic Map