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          • › Rn01012503_m1
          See other SIX1 GE Assays ›
          Gene Symbol:
          Six1
          Gene Name:
          SIX homeobox 1
          Gene Aliases:
          -
          Chromosome Location:
          Chr.6: 95929060 - 95934296 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn01012503_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price 284.00
          Your Price
          Online offer: 266.65
          266.65
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Six1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_053759.1 NP_446211.1 1 - 2 1177 86
          GenBank mRNA AF323957.1 - 1 - 2 544 86

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0600002653.rn.1

          Set Membership:

          Amplicon length between 86 and 100 3' Most Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Panther Classification:

          Molecular Function -

          homeodomain transcription factor

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          ureteric bud development
          branching involved in ureteric bud morphogenesis
          organ induction
          kidney development
          outflow tract morphogenesis
          regulation of transcription, DNA-templated
          pattern specification process
          skeletal muscle tissue development
          sensory perception of sound
          regulation of synaptic growth at neuromuscular junction
          regulation of gene expression
          regulation of skeletal muscle satellite cell proliferation
          facial nerve morphogenesis
          neurogenesis
          epithelial cell differentiation
          thyroid gland development
          olfactory placode formation
          regulation of protein localization
          protein localization to nucleus
          aorta morphogenesis
          inner ear morphogenesis
          middle ear morphogenesis
          negative regulation of apoptotic process
          negative regulation of neuron apoptotic process
          tongue development
          regulation of neuron differentiation
          positive regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          thymus development
          neuron fate specification
          generation of neurons
          embryonic cranial skeleton morphogenesis
          embryonic skeletal system morphogenesis
          skeletal system morphogenesis
          inner ear development
          anatomical structure development
          regulation of epithelial cell proliferation
          myoblast migration
          pharyngeal system development
          myotome development
          fungiform papilla morphogenesis
          trigeminal ganglion development
          otic vesicle development
          renal system development
          metanephric mesenchyme development
          regulation of branch elongation involved in ureteric bud branching
          positive regulation of ureteric bud formation
          mesonephric tubule formation
          ureter smooth muscle cell differentiation
          positive regulation of secondary heart field cardioblast proliferation
          cochlea morphogenesis
          positive regulation of branching involved in ureteric bud morphogenesis
          negative regulation of branching involved in ureteric bud morphogenesis
          positive regulation of mesenchymal cell proliferation involved in ureter development
          regulation of skeletal muscle cell differentiation
          RNA polymerase II core promoter proximal region sequence-specific DNA binding
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          DNA binding
          chromatin binding
          transcription factor activity, sequence-specific DNA binding
          sequence-specific DNA binding
          transcription regulatory region DNA binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P089490 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 549210 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 889713 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 126763 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 143601 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P089490 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P089490 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P089490 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P552728 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10890577 - -
          Affymetrix Rat Gene 1.0 ST Array 10890576 - -
          Affymetrix Rat Gene 1.1 ST Array 10890575 - -
          Rat Genome 230 2.0 Array 1374904_at - -
          Rat Genome 230 2.0 Array 1374904_PM_at - -
          Affymetrix HT Rat Focus Array 1374904_PM_at - -
          Affymetrix HT Rat Focus Array 1374904_at - -
          Affymetrix Rat Clariom S Assay PSR0600018901.rn.1 TC0600002653.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600018903.rn.1 TC0600002653.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600018900.rn.1 TC0600002653.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600018902.rn.1 TC0600002653.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600018908.rn.1 TC0600002653.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600018906.rn.1 TC0600002653.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600018909.rn.1 TC0600002653.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600018907.rn.1 TC0600002653.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600018904.rn.1 TC0600002653.rn.1 RTA TC
          Rat Expression Set 230 1374904_PM_at - -
          Rat Expression Set 230 1374904_at - -
          Affymetrix Rat Gene 1.0 ST Array 10890575 - -
          Rat Genome U34 Set rc_AI175048_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21760629 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1365346 - -

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